{"id":"https://openalex.org/W2105869859","doi":"https://doi.org/10.1093/bioinformatics/btt627","title":"PhosphoNetworks: a database for human phosphorylation networks","display_name":"PhosphoNetworks: a database for human phosphorylation networks","publication_year":2013,"publication_date":"2013-11-13","ids":{"openalex":"https://openalex.org/W2105869859","doi":"https://doi.org/10.1093/bioinformatics/btt627","mag":"2105869859","pmid":"https://pubmed.ncbi.nlm.nih.gov/24227675"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt627","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt627","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/141/48912960/bioinformatics_30_1_141.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/141/48912960/bioinformatics_30_1_141.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030447651","display_name":"Jianfei Hu","orcid":"https://orcid.org/0000-0001-8458-6683"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I35777872","display_name":"North Carolina Agricultural and Technical State University","ror":"https://ror.org/02aze4h65","country_code":"US","type":"education","lineage":["https://openalex.org/I35777872"]},{"id":"https://openalex.org/I4210151837","display_name":"High Throughput Biology (United States)","ror":"https://ror.org/05h1bjp83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151837"]},{"id":"https://openalex.org/I4210164401","display_name":"Sidney Kimmel Comprehensive Cancer Center","ror":"https://ror.org/05m5b8x20","country_code":"US","type":"facility","lineage":["https://openalex.org/I2799853436","https://openalex.org/I4210164401"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianfei Hu","raw_affiliation_strings":["1 Department of Ophthalmology, Johns Hopkins School of Medicine, 2Department of Pharmacology and Molecular Sciences, 3Center for High-Throughput Biology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA, 4Department of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, USA and 5The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Ophthalmology, Johns Hopkins School of Medicine, 2Department of Pharmacology and Molecular Sciences, 3Center for High-Throughput Biology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA, 4Department of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, USA and 5The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I35777872","https://openalex.org/I4210164401","https://openalex.org/I145311948","https://openalex.org/I4210151837"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109954101","display_name":"Hee-Sool Rho","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I35777872","display_name":"North Carolina Agricultural and Technical State University","ror":"https://ror.org/02aze4h65","country_code":"US","type":"education","lineage":["https://openalex.org/I35777872"]},{"id":"https://openalex.org/I4210151837","display_name":"High Throughput Biology (United States)","ror":"https://ror.org/05h1bjp83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151837"]},{"id":"https://openalex.org/I4210164401","display_name":"Sidney Kimmel Comprehensive Cancer Center","ror":"https://ror.org/05m5b8x20","country_code":"US","type":"facility","lineage":["https://openalex.org/I2799853436","https://openalex.org/I4210164401"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hee-Sool Rho","raw_affiliation_strings":["1 Department of Ophthalmology, Johns Hopkins School of Medicine, 2Department of Pharmacology and Molecular Sciences, 3Center for High-Throughput Biology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA, 4Department of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, USA and 5The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Ophthalmology, Johns Hopkins School of Medicine, 2Department of Pharmacology and Molecular Sciences, 3Center for High-Throughput Biology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA, 4Department of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, USA and 5The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I35777872","https://openalex.org/I4210164401","https://openalex.org/I145311948","https://openalex.org/I4210151837"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086262600","display_name":"Robert H. Newman","orcid":"https://orcid.org/0000-0002-3865-0266"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I35777872","display_name":"North Carolina Agricultural and Technical State University","ror":"https://ror.org/02aze4h65","country_code":"US","type":"education","lineage":["https://openalex.org/I35777872"]},{"id":"https://openalex.org/I4210151837","display_name":"High Throughput Biology (United States)","ror":"https://ror.org/05h1bjp83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151837"]},{"id":"https://openalex.org/I4210164401","display_name":"Sidney Kimmel Comprehensive Cancer Center","ror":"https://ror.org/05m5b8x20","country_code":"US","type":"facility","lineage":["https://openalex.org/I2799853436","https://openalex.org/I4210164401"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert H. Newman","raw_affiliation_strings":["1 Department of Ophthalmology, Johns Hopkins School of Medicine, 2Department of Pharmacology and Molecular Sciences, 3Center for High-Throughput Biology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA, 4Department of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, USA and 5The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Ophthalmology, Johns Hopkins School of Medicine, 2Department of Pharmacology and Molecular Sciences, 3Center for High-Throughput Biology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA, 4Department of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, USA and 5The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I35777872","https://openalex.org/I4210164401","https://openalex.org/I145311948","https://openalex.org/I4210151837"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100782821","display_name":"Jin Zhang","orcid":"https://orcid.org/0000-0003-2460-0396"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I35777872","display_name":"North Carolina Agricultural and Technical State University","ror":"https://ror.org/02aze4h65","country_code":"US","type":"education","lineage":["https://openalex.org/I35777872"]},{"id":"https://openalex.org/I4210151837","display_name":"High Throughput Biology (United States)","ror":"https://ror.org/05h1bjp83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151837"]},{"id":"https://openalex.org/I4210164401","display_name":"Sidney Kimmel Comprehensive Cancer Center","ror":"https://ror.org/05m5b8x20","country_code":"US","type":"facility","lineage":["https://openalex.org/I2799853436","https://openalex.org/I4210164401"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jin Zhang","raw_affiliation_strings":["1 Department of Ophthalmology, Johns Hopkins School of Medicine, 2Department of Pharmacology and Molecular Sciences, 3Center for High-Throughput Biology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA, 4Department of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, USA and 5The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Ophthalmology, Johns Hopkins School of Medicine, 2Department of Pharmacology and Molecular Sciences, 3Center for High-Throughput Biology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA, 4Department of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, USA and 5The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I35777872","https://openalex.org/I4210164401","https://openalex.org/I145311948","https://openalex.org/I4210151837"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101999200","display_name":"Heng Zhu","orcid":"https://orcid.org/0000-0002-8426-2889"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I35777872","display_name":"North Carolina Agricultural and Technical State University","ror":"https://ror.org/02aze4h65","country_code":"US","type":"education","lineage":["https://openalex.org/I35777872"]},{"id":"https://openalex.org/I4210151837","display_name":"High Throughput Biology (United States)","ror":"https://ror.org/05h1bjp83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151837"]},{"id":"https://openalex.org/I4210164401","display_name":"Sidney Kimmel Comprehensive Cancer Center","ror":"https://ror.org/05m5b8x20","country_code":"US","type":"facility","lineage":["https://openalex.org/I2799853436","https://openalex.org/I4210164401"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Heng Zhu","raw_affiliation_strings":["1 Department of Ophthalmology, Johns Hopkins School of Medicine, 2Department of Pharmacology and Molecular Sciences, 3Center for High-Throughput Biology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA, 4Department of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, USA and 5The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Ophthalmology, Johns Hopkins School of Medicine, 2Department of Pharmacology and Molecular Sciences, 3Center for High-Throughput Biology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA, 4Department of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, USA and 5The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I35777872","https://openalex.org/I4210164401","https://openalex.org/I145311948","https://openalex.org/I4210151837"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100610506","display_name":"Jiang Qian","orcid":"https://orcid.org/0000-0002-0476-3596"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I35777872","display_name":"North Carolina Agricultural and Technical State University","ror":"https://ror.org/02aze4h65","country_code":"US","type":"education","lineage":["https://openalex.org/I35777872"]},{"id":"https://openalex.org/I4210151837","display_name":"High Throughput Biology (United States)","ror":"https://ror.org/05h1bjp83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151837"]},{"id":"https://openalex.org/I4210164401","display_name":"Sidney Kimmel Comprehensive Cancer Center","ror":"https://ror.org/05m5b8x20","country_code":"US","type":"facility","lineage":["https://openalex.org/I2799853436","https://openalex.org/I4210164401"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jiang Qian","raw_affiliation_strings":["1 Department of Ophthalmology, Johns Hopkins School of Medicine, 2Department of Pharmacology and Molecular Sciences, 3Center for High-Throughput Biology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA, 4Department of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, USA and 5The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Ophthalmology, Johns Hopkins School of Medicine, 2Department of Pharmacology and Molecular Sciences, 3Center for High-Throughput Biology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA, 4Department of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, USA and 5The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I35777872","https://openalex.org/I4210164401","https://openalex.org/I145311948","https://openalex.org/I4210151837"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100610506"],"corresponding_institution_ids":["https://openalex.org/I145311948","https://openalex.org/I35777872","https://openalex.org/I4210151837","https://openalex.org/I4210164401"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.8456,"has_fulltext":false,"cited_by_count":123,"citation_normalized_percentile":{"value":0.93857135,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"30","issue":"1","first_page":"141","last_page":"142"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.8574000000953674,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.8574000000953674,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.07109999656677246,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.029600000008940697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.8999062180519104},{"id":"https://openalex.org/keywords/protein-phosphorylation","display_name":"Protein phosphorylation","score":0.6415333151817322},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6272767782211304},{"id":"https://openalex.org/keywords/phosphorylation-cascade","display_name":"Phosphorylation cascade","score":0.5491349101066589},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5051456093788147},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.4738203287124634},{"id":"https://openalex.org/keywords/substrate-level-phosphorylation","display_name":"Substrate-level phosphorylation","score":0.425353467464447},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3969161808490753},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3453223705291748},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3453202247619629},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3226379156112671},{"id":"https://openalex.org/keywords/protein-kinase-a","display_name":"Protein kinase A","score":0.22791844606399536},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.21022698283195496},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.17959055304527283},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1212860643863678}],"concepts":[{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.8999062180519104},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.6415333151817322},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6272767782211304},{"id":"https://openalex.org/C104551158","wikidata":"https://www.wikidata.org/wiki/Q7187581","display_name":"Phosphorylation cascade","level":5,"score":0.5491349101066589},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5051456093788147},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.4738203287124634},{"id":"https://openalex.org/C173990801","wikidata":"https://www.wikidata.org/wiki/Q910492","display_name":"Substrate-level phosphorylation","level":3,"score":0.425353467464447},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3969161808490753},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3453223705291748},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3453202247619629},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3226379156112671},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.22791844606399536},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.21022698283195496},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.17959055304527283},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1212860643863678}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010770","descriptor_name":"Phosphotransferases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010770","descriptor_name":"Phosphotransferases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010770","descriptor_name":"Phosphotransferases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010770","descriptor_name":"Phosphotransferases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040081","descriptor_name":"Protein Array Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040081","descriptor_name":"Protein Array Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040081","descriptor_name":"Protein Array Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040081","descriptor_name":"Protein Array Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt627","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt627","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/141/48912960/bioinformatics_30_1_141.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24227675","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24227675","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3244466","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3866559","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt627","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt627","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/141/48912960/bioinformatics_30_1_141.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.41999998688697815,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G2156808622","display_name":null,"funder_award_id":"DK082840","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G3102874822","display_name":null,"funder_award_id":"CA160036","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3641152786","display_name":null,"funder_award_id":"RR020839","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G3995966270","display_name":null,"funder_award_id":"GM076102","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4351618111","display_name":null,"funder_award_id":"DP1 CA174423","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4592764240","display_name":null,"funder_award_id":"R01 DK073368","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G5839228074","display_name":null,"funder_award_id":"R01 GM076102","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6785641145","display_name":null,"funder_award_id":"HG006434","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G8384803507","display_name":null,"funder_award_id":"CA125807","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1538925875","https://openalex.org/W2010161321","https://openalex.org/W2056127109","https://openalex.org/W2105597591","https://openalex.org/W2123545746","https://openalex.org/W2147013899","https://openalex.org/W2162172965","https://openalex.org/W6632405249","https://openalex.org/W6664737930"],"related_works":["https://openalex.org/W2491608603","https://openalex.org/W2352214813","https://openalex.org/W2155515046","https://openalex.org/W304798291","https://openalex.org/W2057779043","https://openalex.org/W1557660156","https://openalex.org/W2238473199","https://openalex.org/W4223412920","https://openalex.org/W2989833656","https://openalex.org/W2105869859"],"abstract_inverted_index":{"SUMMARY:":[0],"Phosphorylation":[1],"plays":[2],"an":[3],"important":[4],"role":[5,121],"in":[6,122],"cellular":[7],"signal":[8],"transduction.":[9],"Current":[10],"phosphorylation-related":[11,125],"databases":[12],"often":[13],"focus":[14],"on":[15,34,60,65],"the":[16,50,56,62,66,71,78,99,103],"phosphorylation":[17,31,39,45,58,112],"sites,":[18],"which":[19,61],"are":[20],"mainly":[21],"determined":[22],"by":[23],"mass":[24],"spectrometry.":[25],"Here,":[26],"we":[27],"present":[28],"PhosphoNetworks,":[29],"a":[30,35,81,119],"database":[32,69,104],"built":[33],"high-resolution":[36,42],"map":[37,43],"of":[38,44,87],"networks.":[40,113],"This":[41],"networks":[46],"provides":[47],"not":[48],"only":[49],"kinase-substrate":[51],"relationships":[52,79],"(KSRs),":[53],"but":[54],"also":[55,105],"specific":[57],"sites":[59],"kinases":[63],"act":[64],"substrates.":[67],"The":[68],"contains":[70],"most":[72],"comprehensive":[73],"dataset":[74],"for":[75,85,110],"KSRs,":[76],"including":[77],"from":[80,98],"recent":[82],"high-throughput":[83],"project":[84],"identification":[86],"KSRs":[88,96],"using":[89],"protein":[90],"microarrays,":[91],"as":[92,94],"well":[93],"known":[95],"curated":[97],"literature.":[100],"In":[101],"addition,":[102],"includes":[106],"several":[107],"analytical":[108],"tools":[109],"dissecting":[111],"PhosphoNetworks":[114],"is":[115],"expected":[116],"to":[117],"play":[118],"prominent":[120],"proteomics":[123],"and":[124],"disease":[126],"research.":[127],"AVAILABILITY":[128],"AND":[129],"IMPLEMENTATION:":[130],"http://www.phosphonetworks.org":[131]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":20},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":4}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}