{"id":"https://openalex.org/W2162928593","doi":"https://doi.org/10.1093/bioinformatics/btt606","title":"Inferring therapeutic targets from heterogeneous data: HKDC1 is a novel potential therapeutic target for cancer","display_name":"Inferring therapeutic targets from heterogeneous data: HKDC1 is a novel potential therapeutic target for cancer","publication_year":2013,"publication_date":"2013-10-24","ids":{"openalex":"https://openalex.org/W2162928593","doi":"https://doi.org/10.1093/bioinformatics/btt606","mag":"2162928593","pmid":"https://pubmed.ncbi.nlm.nih.gov/24162464"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt606","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt606","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/6/748/48921452/bioinformatics_30_6_748.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/6/748/48921452/bioinformatics_30_6_748.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054378224","display_name":"Gong\u2010Hua Li","orcid":"https://orcid.org/0000-0002-9311-6613"},"institutions":[{"id":"https://openalex.org/I18489884","display_name":"Kunming Institute of Zoology","ror":"https://ror.org/03m0vk445","country_code":"CN","type":"facility","lineage":["https://openalex.org/I18489884","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gong-Hua Li","raw_affiliation_strings":["1 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences and 2Kunming Institute of Zoology, Chinese University of Hongkong Joint Research Center for Bio-resources and Human Disease Mechanisms, Kunming, Yunnan 650223, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences and 2Kunming Institute of Zoology, Chinese University of Hongkong Joint Research Center for Bio-resources and Human Disease Mechanisms, Kunming, Yunnan 650223, China","institution_ids":["https://openalex.org/I18489884","https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5106613987","display_name":"Jing\u2010Fei Huang","orcid":"https://orcid.org/0009-0002-9529-6328"},"institutions":[{"id":"https://openalex.org/I18489884","display_name":"Kunming Institute of Zoology","ror":"https://ror.org/03m0vk445","country_code":"CN","type":"facility","lineage":["https://openalex.org/I18489884","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jing-Fei Huang","raw_affiliation_strings":["1 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences and 2Kunming Institute of Zoology, Chinese University of Hongkong Joint Research Center for Bio-resources and Human Disease Mechanisms, Kunming, Yunnan 650223, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences and 2Kunming Institute of Zoology, Chinese University of Hongkong Joint Research Center for Bio-resources and Human Disease Mechanisms, Kunming, Yunnan 650223, China","institution_ids":["https://openalex.org/I18489884","https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5106613987"],"corresponding_institution_ids":["https://openalex.org/I18489884","https://openalex.org/I19820366"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.7056,"has_fulltext":true,"cited_by_count":49,"citation_normalized_percentile":{"value":0.71430355,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"6","first_page":"748","last_page":"752"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10631","display_name":"Cancer, Hypoxia, and Metabolism","score":0.972000002861023,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10631","display_name":"Cancer, Hypoxia, and Metabolism","score":0.972000002861023,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.004699999932199717,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11054","display_name":"Adrenal and Paraganglionic Tumors","score":0.0013000000035390258,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.643072783946991},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5842427015304565},{"id":"https://openalex.org/keywords/clinical-trial","display_name":"Clinical trial","score":0.5172715783119202},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47662603855133057},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4133414030075073},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3768143653869629},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37635135650634766},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.33563363552093506},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.17707079648971558},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12544453144073486}],"concepts":[{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.643072783946991},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5842427015304565},{"id":"https://openalex.org/C535046627","wikidata":"https://www.wikidata.org/wiki/Q30612","display_name":"Clinical trial","level":2,"score":0.5172715783119202},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47662603855133057},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4133414030075073},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3768143653869629},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37635135650634766},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.33563363552093506},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.17707079648971558},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12544453144073486}],"mesh":[{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006593","descriptor_name":"Hexokinase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006593","descriptor_name":"Hexokinase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006593","descriptor_name":"Hexokinase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt606","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt606","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/6/748/48921452/bioinformatics_30_6_748.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24162464","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24162464","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt606","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt606","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/6/748/48921452/bioinformatics_30_6_748.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8799999952316284,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1421079982","display_name":null,"funder_award_id":"31123005","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G1788095688","display_name":null,"funder_award_id":"+ 2013CB835100","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6447394658","display_name":"\u9002\u5e94\u6027\u8fdb\u5316\u7684\u5206\u5b50\u673a\u5236\u7814\u7a76","funder_award_id":"31123005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6957283742","display_name":null,"funder_award_id":"2013CB835100","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162928593.pdf","grobid_xml":"https://content.openalex.org/works/W2162928593.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1950485111","https://openalex.org/W2016246269","https://openalex.org/W2020221926","https://openalex.org/W2031628684","https://openalex.org/W2035296409","https://openalex.org/W2042376976","https://openalex.org/W2058743530","https://openalex.org/W2069361214","https://openalex.org/W2071480068","https://openalex.org/W2087312216","https://openalex.org/W2096541451","https://openalex.org/W2103196126","https://openalex.org/W2115659801","https://openalex.org/W2117692326","https://openalex.org/W2122816851","https://openalex.org/W2132352688","https://openalex.org/W2139156287","https://openalex.org/W2146885685","https://openalex.org/W2153767201","https://openalex.org/W2154431984","https://openalex.org/W2157824687","https://openalex.org/W2158217645","https://openalex.org/W2165948908","https://openalex.org/W6640848766"],"related_works":["https://openalex.org/W2064573700","https://openalex.org/W2967366602","https://openalex.org/W2376385980","https://openalex.org/W2075817938","https://openalex.org/W1496498748","https://openalex.org/W2129774558","https://openalex.org/W1997032381","https://openalex.org/W1979593122","https://openalex.org/W2287922696","https://openalex.org/W2783341158"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,73],"discovery":[2],"of":[3,13,35,82,102,105,134],"therapeutic":[4,45,71,165,178,191],"targets":[5,14,46,87,98,179],"is":[6,130,161,187],"important":[7],"for":[8,99,167,193],"cancer":[9,19,21],"treatment.":[10],"Although":[11],"dozens":[12],"have":[15,40,79],"been":[16,142],"used":[17,62,69,117,152],"in":[18,118,153],"therapies,":[20],"remains":[22],"a":[23,27,55,162,173,188],"serious":[24],"disease":[25],"with":[26,90],"high":[28,80],"mortality":[29],"rate.":[30],"Owing":[31],"to":[32,43,63,175],"the":[33,41,106,131,135],"expansion":[34],"cancer-related":[36],"data,":[37,93],"we":[38,53,94],"now":[39],"opportunity":[42],"infer":[44],"using":[47],"computational":[48],"biology":[49],"methods.":[50],"RESULTS:":[51],"Here,":[52],"describe":[54],"method,":[56],"termed":[57],"anticancer":[58],"activity":[59],"enrichment":[60],"analysis,":[61],"determine":[64],"genes":[65,78,109,138],"that":[66,76,139,159,185],"could":[67],"be":[68],"as":[70],"targets.":[72],"results":[74],"show":[75],"these":[77],"likelihoods":[81],"being":[83,151],"developed":[84,172],"into":[85],"clinical":[86,119,154],"(>60%).":[88],"Combined":[89],"gene":[91],"expression":[92],"predicted":[95],"50":[96],"candidate":[97],"lung":[100,168,194],"cancer,":[101],"which":[103],"19":[104],"top":[107,136],"20":[108,137],"are":[110,202],"targeted":[111,143],"by":[112,144],"approved":[113,147],"drugs":[114,116],"or":[115,149],"trials.":[120,155],"A":[121],"hexokinase":[122,125],"family":[123],"member,":[124],"domain-containing":[126],"protein":[127],"1":[128],"(HKDC1),":[129],"only":[132],"one":[133,150],"has":[140],"not":[141],"either":[145],"an":[146],"drug":[148],"Further":[156],"investigations":[157],"indicate":[158],"HKDC1":[160,186],"novel":[163,189],"potential":[164,177,190],"target":[166,192],"cancer.":[169,195],"CONCLUSION:":[170],"We":[171,183],"protocol":[174],"identify":[176],"from":[180],"heterogeneous":[181],"data.":[182],"suggest":[184],"CONTACT:":[196],"huangjf@mail.kiz.ac.cn":[197],"SUPPLEMENTARY":[198],"INFORMATION:":[199],"Supplementary":[200],"data":[201],"available":[203],"at":[204],"Bioinformatics":[205],"online.":[206]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
