{"id":"https://openalex.org/W2117798581","doi":"https://doi.org/10.1093/bioinformatics/btt601","title":"SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop","display_name":"SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop","publication_year":2013,"publication_date":"2013-10-22","ids":{"openalex":"https://openalex.org/W2117798581","doi":"https://doi.org/10.1093/bioinformatics/btt601","mag":"2117798581","pmid":"https://pubmed.ncbi.nlm.nih.gov/24149054"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt601","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/119/17124622/btt601.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/119/17124622/btt601.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083903217","display_name":"Andr\u00e9 Schumacher","orcid":null},"institutions":[{"id":"https://openalex.org/I1297971548","display_name":"International Computer Science Institute","ror":"https://ror.org/01ewh7m12","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1297971548"]},{"id":"https://openalex.org/I2800759272","display_name":"Center for Advanced Studies Research and Development in Sardinia","ror":"https://ror.org/03jdxdk20","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2800759272"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI","IT","US"],"is_corresponding":true,"raw_author_name":"Andr\u00e9 Schumacher","raw_affiliation_strings":["1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland","institution_ids":["https://openalex.org/I4210150043","https://openalex.org/I9927081","https://openalex.org/I32943570","https://openalex.org/I1297971548","https://openalex.org/I2800759272"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047833562","display_name":"Luca Pireddu","orcid":"https://orcid.org/0000-0002-4663-5613"},"institutions":[{"id":"https://openalex.org/I1297971548","display_name":"International Computer Science Institute","ror":"https://ror.org/01ewh7m12","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1297971548"]},{"id":"https://openalex.org/I2800759272","display_name":"Center for Advanced Studies Research and Development in Sardinia","ror":"https://ror.org/03jdxdk20","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2800759272"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI","IT","US"],"is_corresponding":false,"raw_author_name":"Luca Pireddu","raw_affiliation_strings":["1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland","institution_ids":["https://openalex.org/I4210150043","https://openalex.org/I9927081","https://openalex.org/I32943570","https://openalex.org/I1297971548","https://openalex.org/I2800759272"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031291230","display_name":"Matti Niemenmaa","orcid":null},"institutions":[{"id":"https://openalex.org/I1297971548","display_name":"International Computer Science Institute","ror":"https://ror.org/01ewh7m12","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1297971548"]},{"id":"https://openalex.org/I2800759272","display_name":"Center for Advanced Studies Research and Development in Sardinia","ror":"https://ror.org/03jdxdk20","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2800759272"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI","IT","US"],"is_corresponding":false,"raw_author_name":"Matti Niemenmaa","raw_affiliation_strings":["1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland","institution_ids":["https://openalex.org/I4210150043","https://openalex.org/I9927081","https://openalex.org/I32943570","https://openalex.org/I1297971548","https://openalex.org/I2800759272"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030352001","display_name":"Aleksi Kallio","orcid":"https://orcid.org/0000-0002-6278-5160"},"institutions":[{"id":"https://openalex.org/I1297971548","display_name":"International Computer Science Institute","ror":"https://ror.org/01ewh7m12","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1297971548"]},{"id":"https://openalex.org/I2800759272","display_name":"Center for Advanced Studies Research and Development in Sardinia","ror":"https://ror.org/03jdxdk20","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2800759272"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI","IT","US"],"is_corresponding":false,"raw_author_name":"Aleksi Kallio","raw_affiliation_strings":["1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland","institution_ids":["https://openalex.org/I4210150043","https://openalex.org/I9927081","https://openalex.org/I32943570","https://openalex.org/I1297971548","https://openalex.org/I2800759272"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084707312","display_name":"Eija Korpelainen","orcid":"https://orcid.org/0000-0002-4406-5602"},"institutions":[{"id":"https://openalex.org/I1297971548","display_name":"International Computer Science Institute","ror":"https://ror.org/01ewh7m12","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1297971548"]},{"id":"https://openalex.org/I2800759272","display_name":"Center for Advanced Studies Research and Development in Sardinia","ror":"https://ror.org/03jdxdk20","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2800759272"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI","IT","US"],"is_corresponding":false,"raw_author_name":"Eija Korpelainen","raw_affiliation_strings":["1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland","institution_ids":["https://openalex.org/I4210150043","https://openalex.org/I9927081","https://openalex.org/I32943570","https://openalex.org/I1297971548","https://openalex.org/I2800759272"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073829656","display_name":"Gianluigi Zanetti","orcid":"https://orcid.org/0000-0003-1683-7350"},"institutions":[{"id":"https://openalex.org/I1297971548","display_name":"International Computer Science Institute","ror":"https://ror.org/01ewh7m12","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1297971548"]},{"id":"https://openalex.org/I2800759272","display_name":"Center for Advanced Studies Research and Development in Sardinia","ror":"https://ror.org/03jdxdk20","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2800759272"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI","IT","US"],"is_corresponding":false,"raw_author_name":"Gianluigi Zanetti","raw_affiliation_strings":["1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland","institution_ids":["https://openalex.org/I4210150043","https://openalex.org/I9927081","https://openalex.org/I32943570","https://openalex.org/I1297971548","https://openalex.org/I2800759272"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078732211","display_name":"Keijo Heljanko","orcid":"https://orcid.org/0000-0002-4547-2701"},"institutions":[{"id":"https://openalex.org/I1297971548","display_name":"International Computer Science Institute","ror":"https://ror.org/01ewh7m12","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1297971548"]},{"id":"https://openalex.org/I2800759272","display_name":"Center for Advanced Studies Research and Development in Sardinia","ror":"https://ror.org/03jdxdk20","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2800759272"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI","IT","US"],"is_corresponding":false,"raw_author_name":"Keijo Heljanko","raw_affiliation_strings":["1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland, 2International Computer Science Institute, Berkeley, CA, USA, 3CRS4\u2014Center for Advanced Studies, Research and Development in Sardinia, Italy and 4CSC\u2014IT Center for Science, Finland","institution_ids":["https://openalex.org/I4210150043","https://openalex.org/I9927081","https://openalex.org/I32943570","https://openalex.org/I1297971548","https://openalex.org/I2800759272"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5083903217"],"corresponding_institution_ids":["https://openalex.org/I1297971548","https://openalex.org/I2800759272","https://openalex.org/I32943570","https://openalex.org/I4210150043","https://openalex.org/I9927081"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":31.7527,"has_fulltext":true,"cited_by_count":93,"citation_normalized_percentile":{"value":0.9960462,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"30","issue":"1","first_page":"119","last_page":"120"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.26600000262260437,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.26600000262260437,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.121799997985363,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.08060000091791153,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.8862884044647217},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8843280673027039},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.8750523328781128},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.7512894868850708},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6918390393257141},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5019481182098389},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4391985535621643},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.43200838565826416},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.4206521213054657},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4108220636844635},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35636091232299805},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.335284948348999},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3213244080543518}],"concepts":[{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.8862884044647217},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8843280673027039},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.8750523328781128},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.7512894868850708},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6918390393257141},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5019481182098389},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4391985535621643},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.43200838565826416},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.4206521213054657},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4108220636844635},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35636091232299805},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.335284948348999},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3213244080543518},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btt601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt601","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/119/17124622/btt601.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24149054","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24149054","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2851076","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3866557","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3866557","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3866557","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt601","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/119/17124622/btt601.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2117798581.pdf","grobid_xml":"https://content.openalex.org/works/W2117798581.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1908617982","https://openalex.org/W1990073900","https://openalex.org/W2063652569","https://openalex.org/W2065783627","https://openalex.org/W2081930221","https://openalex.org/W2104993419","https://openalex.org/W2109701112","https://openalex.org/W2130381967","https://openalex.org/W2141978878","https://openalex.org/W2144320400","https://openalex.org/W2149059931","https://openalex.org/W2160363604","https://openalex.org/W6639986597"],"related_works":["https://openalex.org/W2036021480","https://openalex.org/W2546377002","https://openalex.org/W4285209474","https://openalex.org/W22571951","https://openalex.org/W2046541848","https://openalex.org/W4384009753","https://openalex.org/W2951541096","https://openalex.org/W2791776396","https://openalex.org/W2790902885","https://openalex.org/W4286531993"],"abstract_inverted_index":{"SUMMARY:":[0],"Hadoop":[1,26],"MapReduce-based":[2],"approaches":[3],"have":[4,43],"become":[5],"increasingly":[6],"popular":[7],"due":[8],"to":[9,53],"their":[10],"scalability":[11,86],"in":[12,25,60],"processing":[13,81],"large":[14],"sequencing":[15,58],"datasets.":[16],"However,":[17],"as":[18],"these":[19],"methods":[20],"typically":[21],"require":[22],"in-depth":[23],"expertise":[24],"and":[27,48,56,63,78,91],"Java,":[28],"they":[29],"are":[30],"still":[31],"out":[32],"of":[33,35,51],"reach":[34],"many":[36,88],"bioinformaticians.":[37],"To":[38],"solve":[39],"this":[40],"problem,":[41],"we":[42],"created":[44],"SeqPig,":[45],"a":[46,49,61],"library":[47],"collection":[50],"tools":[52],"manipulate,":[54],"analyze":[55],"query":[57],"datasets":[59],"scalable":[62],"simple":[64],"manner.":[65],"SeqPigscripts":[66],"use":[67,94],"the":[68,103],"Hadoop-based":[69],"distributed":[70],"scripting":[71],"engine":[72],"Apache":[73],"Pig,":[74],"which":[75],"automatically":[76],"parallelizes":[77],"distributes":[79],"data":[80],"tasks.":[82],"We":[83],"demonstrate":[84],"SeqPig's":[85],"over":[87],"computing":[89],"nodes":[90],"illustrate":[92],"its":[93],"with":[95],"example":[96],"scripts.":[97],"AVAILABILITY":[98],"AND":[99],"IMPLEMENTATION:":[100],"Available":[101],"under":[102],"open":[104],"source":[105],"MIT":[106],"license":[107],"at":[108],"http://sourceforge.net/projects/seqpig/":[109]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":24},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":12}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
