{"id":"https://openalex.org/W2168222404","doi":"https://doi.org/10.1093/bioinformatics/btt598","title":"BEReX: Biomedical Entity-Relationship eXplorer","display_name":"BEReX: Biomedical Entity-Relationship eXplorer","publication_year":2013,"publication_date":"2013-10-21","ids":{"openalex":"https://openalex.org/W2168222404","doi":"https://doi.org/10.1093/bioinformatics/btt598","mag":"2168222404","pmid":"https://pubmed.ncbi.nlm.nih.gov/24149052"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt598","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt598","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/135/48912965/bioinformatics_30_1_135.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/135/48912965/bioinformatics_30_1_135.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003685784","display_name":"Minji Jeon","orcid":"https://orcid.org/0000-0001-5731-6186"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["KR","US"],"is_corresponding":true,"raw_author_name":"Minji Jeon","raw_affiliation_strings":["1 Interdisciplinary Graduate Program in Bioinformatics, 2Department of Computer Science and Engineering, Korea University, Seoul, Korea and 3Department of Medicine/Medical Oncology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA"],"affiliations":[{"raw_affiliation_string":"1 Interdisciplinary Graduate Program in Bioinformatics, 2Department of Computer Science and Engineering, Korea University, Seoul, Korea and 3Department of Medicine/Medical Oncology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134","https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005418049","display_name":"Sunwon Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Sunwon Lee","raw_affiliation_strings":["1 Interdisciplinary Graduate Program in Bioinformatics, 2Department of Computer Science and Engineering, Korea University, Seoul, Korea and 3Department of Medicine/Medical Oncology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA"],"affiliations":[{"raw_affiliation_string":"1 Interdisciplinary Graduate Program in Bioinformatics, 2Department of Computer Science and Engineering, Korea University, Seoul, Korea and 3Department of Medicine/Medical Oncology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134","https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004629166","display_name":"Kyubum Lee","orcid":"https://orcid.org/0000-0003-2015-3939"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Kyubum Lee","raw_affiliation_strings":["1 Interdisciplinary Graduate Program in Bioinformatics, 2Department of Computer Science and Engineering, Korea University, Seoul, Korea and 3Department of Medicine/Medical Oncology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA"],"affiliations":[{"raw_affiliation_string":"1 Interdisciplinary Graduate Program in Bioinformatics, 2Department of Computer Science and Engineering, Korea University, Seoul, Korea and 3Department of Medicine/Medical Oncology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134","https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019556057","display_name":"Aik Choon Tan","orcid":"https://orcid.org/0000-0003-2955-8369"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Aik-Choon Tan","raw_affiliation_strings":["1 Interdisciplinary Graduate Program in Bioinformatics, 2Department of Computer Science and Engineering, Korea University, Seoul, Korea and 3Department of Medicine/Medical Oncology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA"],"affiliations":[{"raw_affiliation_string":"1 Interdisciplinary Graduate Program in Bioinformatics, 2Department of Computer Science and Engineering, Korea University, Seoul, Korea and 3Department of Medicine/Medical Oncology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134","https://openalex.org/I197347611"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076917278","display_name":"Jaewoo Kang","orcid":"https://orcid.org/0000-0001-6798-9106"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Jaewoo Kang","raw_affiliation_strings":["1 Interdisciplinary Graduate Program in Bioinformatics, 2Department of Computer Science and Engineering, Korea University, Seoul, Korea and 3Department of Medicine/Medical Oncology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA"],"affiliations":[{"raw_affiliation_string":"1 Interdisciplinary Graduate Program in Bioinformatics, 2Department of Computer Science and Engineering, Korea University, Seoul, Korea and 3Department of Medicine/Medical Oncology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134","https://openalex.org/I197347611"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5003685784"],"corresponding_institution_ids":["https://openalex.org/I197347611","https://openalex.org/I51713134"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5989,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.69948654,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"30","issue":"1","first_page":"135","last_page":"136"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9765999913215637,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9602000117301941,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7548301219940186},{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.7136883735656738},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5769028067588806},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5479986667633057},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5003862380981445},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4579857587814331},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.45269399881362915},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.44261226058006287},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.41371724009513855},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.354123055934906},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13734838366508484},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.12958189845085144}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7548301219940186},{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.7136883735656738},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5769028067588806},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5479986667633057},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5003862380981445},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4579857587814331},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.45269399881362915},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.44261226058006287},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.41371724009513855},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.354123055934906},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13734838366508484},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.12958189845085144},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020811","descriptor_name":"Biomedical Technology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020811","descriptor_name":"Biomedical Technology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020811","descriptor_name":"Biomedical Technology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt598","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt598","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/135/48912965/bioinformatics_30_1_135.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24149052","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24149052","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt598","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt598","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/135/48912965/bioinformatics_30_1_135.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G3494007552","display_name":null,"funder_award_id":"NRF-2012","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G982292920","display_name":null,"funder_award_id":"NRF-20","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168222404.pdf","grobid_xml":"https://content.openalex.org/works/W2168222404.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1508416409","https://openalex.org/W1854214752","https://openalex.org/W1972853136","https://openalex.org/W1994309500","https://openalex.org/W1998767819","https://openalex.org/W2000860171","https://openalex.org/W2003516452","https://openalex.org/W2010457001","https://openalex.org/W2015408520","https://openalex.org/W2018740272","https://openalex.org/W2063280109","https://openalex.org/W2099656145","https://openalex.org/W2103017472","https://openalex.org/W2105924489","https://openalex.org/W2122863289","https://openalex.org/W2137052779","https://openalex.org/W2329648702","https://openalex.org/W6639055396"],"related_works":["https://openalex.org/W2365158734","https://openalex.org/W2009313526","https://openalex.org/W2465211533","https://openalex.org/W2157969515","https://openalex.org/W2137827821","https://openalex.org/W129624489","https://openalex.org/W4387804095","https://openalex.org/W2767891136","https://openalex.org/W4388615774","https://openalex.org/W2137052779"],"abstract_inverted_index":{"BEReX":[0],"and":[1],"a":[2],"detailed":[3],"user":[4],"guide":[5],"are":[6],"available":[7],"for":[8],"download":[9],"at":[10],"our":[11],"project":[12],"Web":[13],"site":[14],"(http://infos.korea.ac.kr/berex).":[15]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
