{"id":"https://openalex.org/W2115088582","doi":"https://doi.org/10.1093/bioinformatics/btt597","title":"Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure","display_name":"Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure","publication_year":2013,"publication_date":"2013-10-27","ids":{"openalex":"https://openalex.org/W2115088582","doi":"https://doi.org/10.1093/bioinformatics/btt597","mag":"2115088582","pmid":"https://pubmed.ncbi.nlm.nih.gov/24167155"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/61/48913419/bioinformatics_30_1_61.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/61/48913419/bioinformatics_30_1_61.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033274444","display_name":"Paulo Vieira Milreu","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":true,"raw_author_name":"Paulo Vieira Milreu","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038345105","display_name":"Cec\u00edlia C. Klein","orcid":"https://orcid.org/0000-0001-9736-5994"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":false,"raw_author_name":"Cecilia Coimbra Klein","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001473736","display_name":"Ludovic Cottret","orcid":"https://orcid.org/0000-0001-7418-7750"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":false,"raw_author_name":"Ludovic Cottret","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106184492","display_name":"Vicente Acu\u00f1a","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":false,"raw_author_name":"Vicente Acu\u00f1a","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064256723","display_name":"\u00c9tienne Birmel\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":false,"raw_author_name":"Etienne Birmel\u00e9","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002858161","display_name":"Michele Borassi","orcid":"https://orcid.org/0000-0003-0287-4564"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":false,"raw_author_name":"Michele Borassi","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091074065","display_name":"Christophe Junot","orcid":"https://orcid.org/0000-0003-0019-6827"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":false,"raw_author_name":"Christophe Junot","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064823807","display_name":"Alberto Marchetti-Spaccamela","orcid":"https://orcid.org/0000-0002-7991-4416"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":false,"raw_author_name":"Alberto Marchetti-Spaccamela","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035852380","display_name":"Andrea Marino","orcid":"https://orcid.org/0000-0002-9854-7885"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":false,"raw_author_name":"Andrea Marino","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044184077","display_name":"Leen Stougie","orcid":"https://orcid.org/0000-0001-6938-8902"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":false,"raw_author_name":"Leen Stougie","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008100854","display_name":"Fabien Jourdan","orcid":"https://orcid.org/0000-0001-9401-2894"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":false,"raw_author_name":"Fabien Jourdan","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012362492","display_name":"Pierluigi Crescenzi","orcid":"https://orcid.org/0000-0001-8789-3195"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":false,"raw_author_name":"Pierluigi Crescenzi","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087487293","display_name":"Vincent Lacroix","orcid":"https://orcid.org/0000-0002-4235-8524"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":true,"raw_author_name":"Vincent Lacroix","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110531794","display_name":"Marie-France Sagot","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210110888","display_name":"Toulouse Biotechnology Institute, Bio & Chemical Engineering","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210110888"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]},{"id":"https://openalex.org/I4387155550","display_name":"Center for Mathematical Modeling","ror":"https://ror.org/00wz2vk41","country_code":"CL","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155550","https://openalex.org/I69737025"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["BR","CL","FR","IT"],"is_corresponding":true,"raw_author_name":"Marie-France Sagot","raw_affiliation_strings":["1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 INRIA Grenoble Rh\u00f4ne-Alpes & Universit\u00e9 de Lyon, F-69000 Lyon, 2Universit\u00e9 Lyon 1; CNRS, UMR5558 LBBE, France, 3Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica (LNCC), Petr\u00f3polis, Brazil, 4LISBP, UMR CNRS 5504 - INRA 792, Toulouse, France, 5Mathomics, Center for Mathematical Modeling (UMI-2807 CNRS) and Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile 6Lab. Statistique et G\u00e9nome, CNRS UMR8071 INRA1152, Universit\u00e9 d\u2019\u00c9vry, France, 7Scuola Normale Superiore, 56126 Pisa, Italy, 8Laboratoire d\u2019Etude du M\u00e9tabolisme des M\u00e9dicaments, DSV/iBiTecS/SPI, CEA/Saclay, 91191 Gif-sur-Yvette, France, 9La Sapienza University of Rome, Rome, 10Dipartimento di Sistemi e Informatica, Universit\u00e0 di Firenze, I-50134 Firenze, Italy, 11VU University and CWI, Amsterdam, The Netherlands and 12INRA UMR1331 - Toxalim, Toulouse, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5033274444","https://openalex.org/A5087487293","https://openalex.org/A5110531794"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210110888","https://openalex.org/I4210135640","https://openalex.org/I4210142352","https://openalex.org/I4387155550","https://openalex.org/I861853513"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":0.5557,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.67261407,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":97},"biblio":{"volume":"30","issue":"1","first_page":"61","last_page":"70"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.29170000553131104,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.29170000553131104,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.23720000684261322,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.16009999811649323,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.7920945882797241},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.5533266067504883},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5337556004524231},{"id":"https://openalex.org/keywords/yeast","display_name":"Yeast","score":0.5141423344612122},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.45231857895851135},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.42842769622802734},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3768065273761749},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3264387547969818},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.26748907566070557},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2281818687915802},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.22020882368087769},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20803245902061462},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15192925930023193}],"concepts":[{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.7920945882797241},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.5533266067504883},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5337556004524231},{"id":"https://openalex.org/C2779222958","wikidata":"https://www.wikidata.org/wiki/Q45422","display_name":"Yeast","level":2,"score":0.5141423344612122},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.45231857895851135},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.42842769622802734},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3768065273761749},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3264387547969818},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.26748907566070557},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2281818687915802},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.22020882368087769},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20803245902061462},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15192925930023193}],"mesh":[{"descriptor_ui":"D002104","descriptor_name":"Cadmium","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D002104","descriptor_name":"Cadmium","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D002104","descriptor_name":"Cadmium","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D004789","descriptor_name":"Enzyme Activation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004789","descriptor_name":"Enzyme Activation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004789","descriptor_name":"Enzyme Activation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005978","descriptor_name":"Glutathione","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D005978","descriptor_name":"Glutathione","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D005978","descriptor_name":"Glutathione","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":11,"locations":[{"id":"doi:10.1093/bioinformatics/btt597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/61/48913419/bioinformatics_30_1_61.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24167155","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24167155","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:research.vu.nl:openaire_cris_publications/db68f6e9-4673-419b-a9f8-f65448b78bb3","is_oa":true,"landing_page_url":"https://research.vu.nl/en/publications/db68f6e9-4673-419b-a9f8-f65448b78bb3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Vieira Milreu, P, Coimbra Klein, C, Cottret, L, Acuna, V, Birmele, E, Borassi, M, Junot, C, Marchetti-Spaccamela, A, Marino, A, Stougie, L, Jourdan, F, Crescenzi, P, Lacroix, V & Sagot, M-F 2014, 'Telling metabolic stories to explore metabolomics data -- A case study on the Yeast response to cadmium exposure.', Bioinformatics, vol. 30, no. 1, pp. 61-70. https://doi.org/10.1093/bioinformatics/btt597","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:americanae.aecid.es:3236325","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=3236325","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:americanae.aecid.es:3266888","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=3266888","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:americanae.aecid.es:3453177","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=3453177","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:arpi.unipi.it:11568/843533","is_oa":false,"landing_page_url":"http://hdl.handle.net/11568/843533","pdf_url":null,"source":{"id":"https://openalex.org/S4377196265","display_name":"CINECA IRIS Institutial research information system (University of Pisa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I108290504","host_organization_name":"University of Pisa","host_organization_lineage":["https://openalex.org/I108290504"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:flore.unifi.it:2158/859500","is_oa":false,"landing_page_url":"http://hdl.handle.net/2158/859500","pdf_url":null,"source":{"id":"https://openalex.org/S4306402033","display_name":"Florence Research (University of Florence)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45084792","host_organization_name":"University of Florence","host_organization_lineage":["https://openalex.org/I45084792"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:localhost:10533/148062","is_oa":true,"landing_page_url":"http://hdl.handle.net/10533/148062","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:localhost:10533/238521","is_oa":true,"landing_page_url":"http://hdl.handle.net/10533/238521","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:repositorio.uchile.cl:2250/126919","is_oa":true,"landing_page_url":"http://repositorio.uchile.cl/handle/2250/126919","pdf_url":null,"source":{"id":"https://openalex.org/S4306481413","display_name":"Universidad de Chile","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Art\u00edculo de revista"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/61/48913419/bioinformatics_30_1_61.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6100000143051147,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2861369480","display_name":null,"funder_award_id":"FP7 2007-2013","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G4717252311","display_name":"Dynamiques eco-\u00e9volutives des maladies infectieuses","funder_award_id":"ANR-11-LABX-0048","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8167852807","display_name":"Combinatorial exploration of the molecular landscape and evolution of intimate species relations","funder_award_id":"ANR-08-BLAN-0293","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320313934","display_name":"Institut national de recherche en informatique et en automatique (INRIA)","ror":"https://ror.org/02kvxyf05"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"},{"id":"https://openalex.org/F4320330080","display_name":"Laboratoire d'Excellence Ecofect","ror":null},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2115088582.pdf","grobid_xml":"https://content.openalex.org/works/W2115088582.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W625604563","https://openalex.org/W1573446871","https://openalex.org/W1598572316","https://openalex.org/W1611854178","https://openalex.org/W1626632972","https://openalex.org/W1974624244","https://openalex.org/W2003268506","https://openalex.org/W2005852281","https://openalex.org/W2024938665","https://openalex.org/W2036425854","https://openalex.org/W2042680587","https://openalex.org/W2046760236","https://openalex.org/W2057012490","https://openalex.org/W2057865646","https://openalex.org/W2077587123","https://openalex.org/W2085993965","https://openalex.org/W2092899907","https://openalex.org/W2099039198","https://openalex.org/W2100980426","https://openalex.org/W2104766417","https://openalex.org/W2114114129","https://openalex.org/W2117555142","https://openalex.org/W2128601422","https://openalex.org/W2130410032","https://openalex.org/W2135607659","https://openalex.org/W2153020710","https://openalex.org/W2159675211","https://openalex.org/W2163410580","https://openalex.org/W2163575083","https://openalex.org/W2165934569","https://openalex.org/W2171662214","https://openalex.org/W4233060585","https://openalex.org/W4246932843","https://openalex.org/W4298226842","https://openalex.org/W6684660813"],"related_works":["https://openalex.org/W24843447","https://openalex.org/W94193318","https://openalex.org/W42525420","https://openalex.org/W2217383874","https://openalex.org/W4288069755","https://openalex.org/W2029483977","https://openalex.org/W1854805732","https://openalex.org/W3180007124","https://openalex.org/W2332273970","https://openalex.org/W4229007988"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,27,304],"increasing":[2],"availability":[3],"of":[4,19,34,37,92,97,135,172,179,185,197,261,299],"metabolomics":[5,77],"data":[6,28,74,290],"enables":[7,70],"to":[8,22,51,56,71,85,114,182,187,209,224,256],"better":[9],"understand":[10],"the":[11,16,32,73,90,95,117,132,180,183,217,221,245,259,262,269,307],"metabolic":[12,80],"processes":[13],"involved":[14],"in":[15,31,105,157,258,279,295,310],"immediate":[17],"response":[18,184,223,231,253],"an":[20,177],"organism":[21],"environmental":[23],"changes":[24,134,270],"and":[25,46,137,202,273,291],"stress.":[26],"usually":[29],"come":[30],"form":[33],"a":[35,67,86,152,158,170,195,211,241,296],"list":[36],"metabolites":[38,61,96],"whose":[39],"concentrations":[40],"significantly":[41],"changed":[42],"under":[43,142],"some":[44],"conditions,":[45],"are":[47,62,207],"thus":[48],"not":[49],"easy":[50],"interpret":[52],"without":[53],"being":[54],"able":[55,208],"precisely":[57],"visualize":[58],"how":[59],"such":[60,173],"interconnected.":[63],"RESULTS:":[64],"We":[65,175,190,226,238,264],"present":[66],"method":[68,181,286,308],"that":[69,155,205,213,229,277],"organize":[72],"from":[75],"any":[76,143],"experiment":[78],"into":[79,151],"stories.":[81,165,174],"Each":[82],"story":[83,212],"corresponds":[84],"possible":[87],"scenario":[88],"explaining":[89],"flow":[91],"matter":[93],"between":[94,120],"interest.":[98],"These":[99],"scenarios":[100],"may":[101],"then":[102],"be":[103,148,281,293],"ranked":[104],"different":[106],"ways":[107],"depending":[108],"on":[109,131,235],"which":[110],"interpretation":[111],"one":[112],"wishes":[113],"emphasize":[115],"for":[116,199,243,268,306],"causal":[118],"link":[119],"two":[121],"affected":[122],"metabolites:":[123],"enzyme":[124,126,236],"activation,":[125],"inhibition":[127],"or":[128,248],"domino":[129],"effect":[130],"concentration":[133],"substrates":[136],"products.":[138],"Equally":[139],"probable":[140],"stories":[141],"selected":[144],"ranking":[145],"scheme":[146],"can":[147],"further":[149,227],"grouped":[150],"single":[153],"anthology":[154,167],"summarizes,":[156],"unique":[159],"subnetwork,":[160],"all":[161],"equivalently":[162],"plausible":[163],"alternative":[164,246],"An":[166],"is":[168,232,254,313],"simply":[169],"union":[171],"detail":[176],"application":[178],"yeast":[186,222],"cadmium":[188],"exposure.":[189],"use":[191],"this":[192,230,251,311],"system":[193],"as":[194],"proof":[196],"concept":[198],"our":[200,285],"method,":[201],"we":[203,206,271,274],"show":[204,228],"find":[210],"reproduces":[214],"very":[215],"well":[216],"current":[218],"knowledge":[219],"about":[220],"cadmium.":[225],"mostly":[233],"based":[234],"activation.":[237],"also":[239],"provide":[240],"framework":[242],"exploring":[244],"pathways":[247],"side":[249],"effects":[250],"local":[252],"expected":[255],"have":[257],"rest":[260],"network.":[263],"discuss":[265],"several":[266],"interpretations":[267],"see,":[272],"suggest":[275],"hypotheses":[276],"could":[278,292],"principle":[280],"experimentally":[282],"tested.":[283],"Noticeably,":[284],"requires":[287],"simple":[288],"input":[289],"used":[294],"wide":[297],"variety":[298],"applications.":[300],"AVAILABILITY":[301],"AND":[302],"IMPLEMENTATION:":[303],"code":[305],"presented":[309],"article":[312],"available":[314],"at":[315],"http://gobbolino.gforge.inria.fr.":[316]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":3}],"updated_date":"2026-08-29T07:29:34.045763","created_date":"2025-10-10T00:00:00"}
