{"id":"https://openalex.org/W2164290176","doi":"https://doi.org/10.1093/bioinformatics/btt581","title":"The semantic measures library and toolkit: fast computation of semantic similarity and relatedness using biomedical ontologies","display_name":"The semantic measures library and toolkit: fast computation of semantic similarity and relatedness using biomedical ontologies","publication_year":2013,"publication_date":"2013-10-09","ids":{"openalex":"https://openalex.org/W2164290176","doi":"https://doi.org/10.1093/bioinformatics/btt581","mag":"2164290176","pmid":"https://pubmed.ncbi.nlm.nih.gov/24108186"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt581","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt581","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081436487","display_name":"S\u00e9bastien Harispe","orcid":"https://orcid.org/0000-0001-5630-2743"},"institutions":[{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"S\u00e9bastien Harispe","raw_affiliation_strings":["LGI2P/EMA Research Centre, Site EERIE, Parc Scientifique G. Besse, 30035 N\u00eemes cedex 1, France","Institut des Sciences de l'Evolution de Montpellier"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LGI2P/EMA Research Centre, Site EERIE, Parc Scientifique G. Besse, 30035 N\u00eemes cedex 1, France","institution_ids":[]},{"raw_affiliation_string":"Institut des Sciences de l'Evolution de Montpellier","institution_ids":["https://openalex.org/I4210105943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072128914","display_name":"Sylvie Ranwez","orcid":"https://orcid.org/0000-0002-8707-0313"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sylvie Ranwez","raw_affiliation_strings":["LGI2P/EMA Research Centre, Site EERIE, Parc Scientifique G. Besse, 30035 N\u00eemes cedex 1, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LGI2P/EMA Research Centre, Site EERIE, Parc Scientifique G. Besse, 30035 N\u00eemes cedex 1, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061724796","display_name":"Stefan Janaqi","orcid":"https://orcid.org/0000-0002-6536-3799"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefan Janaqi","raw_affiliation_strings":["LGI2P/EMA Research Centre, Site EERIE, Parc Scientifique G. Besse, 30035 N\u00eemes cedex 1, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LGI2P/EMA Research Centre, Site EERIE, Parc Scientifique G. Besse, 30035 N\u00eemes cedex 1, France","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019212344","display_name":"Jacky Montmain","orcid":"https://orcid.org/0000-0003-0918-5788"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jacky Montmain","raw_affiliation_strings":["LGI2P/EMA Research Centre, Site EERIE, Parc Scientifique G. Besse, 30035 N\u00eemes cedex 1, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LGI2P/EMA Research Centre, Site EERIE, Parc Scientifique G. Besse, 30035 N\u00eemes cedex 1, France","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.4335,"has_fulltext":false,"cited_by_count":130,"citation_normalized_percentile":{"value":0.97457142,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"30","issue":"5","first_page":"740","last_page":"742"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9724000096321106,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9724000096321106,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.00839999970048666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.004800000227987766,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8490152359008789},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.712291955947876},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6551361083984375},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6058928966522217},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5803671479225159},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5180068612098694},{"id":"https://openalex.org/keywords/semantic-grid","display_name":"Semantic grid","score":0.48418405652046204},{"id":"https://openalex.org/keywords/semantic-computing","display_name":"Semantic computing","score":0.470640629529953},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.46929317712783813},{"id":"https://openalex.org/keywords/semantic-technology","display_name":"Semantic technology","score":0.4522356390953064},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4173704981803894},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.41471296548843384},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.35936787724494934},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15770834684371948},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13234686851501465}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8490152359008789},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.712291955947876},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6551361083984375},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6058928966522217},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5803671479225159},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5180068612098694},{"id":"https://openalex.org/C103692084","wikidata":"https://www.wikidata.org/wiki/Q1765824","display_name":"Semantic grid","level":3,"score":0.48418405652046204},{"id":"https://openalex.org/C511149849","wikidata":"https://www.wikidata.org/wiki/Q7449051","display_name":"Semantic computing","level":3,"score":0.470640629529953},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.46929317712783813},{"id":"https://openalex.org/C6881194","wikidata":"https://www.wikidata.org/wiki/Q7449091","display_name":"Semantic technology","level":4,"score":0.4522356390953064},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4173704981803894},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.41471296548843384},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.35936787724494934},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15770834684371948},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13234686851501465},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt581","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt581","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24108186","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24108186","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-01059329v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01059329","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2014, 30 (5), pp.740-742. &#x27E8;10.1093/bioinformatics/btt581&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W38401161","https://openalex.org/W186091728","https://openalex.org/W1977878983","https://openalex.org/W1981021538","https://openalex.org/W1999722941","https://openalex.org/W2084168100","https://openalex.org/W2099364528","https://openalex.org/W2100761975","https://openalex.org/W2103017472","https://openalex.org/W2113142309","https://openalex.org/W2123152121","https://openalex.org/W2154693238","https://openalex.org/W2165428180","https://openalex.org/W2946553200","https://openalex.org/W6607411190"],"related_works":["https://openalex.org/W2280628760","https://openalex.org/W3134365128","https://openalex.org/W2495387725","https://openalex.org/W4229736327","https://openalex.org/W3012445987","https://openalex.org/W2101810124","https://openalex.org/W4243025272","https://openalex.org/W2108020129","https://openalex.org/W1990650227","https://openalex.org/W2059508983"],"abstract_inverted_index":{"UNLABELLED:":[0],"The":[1,39,87],"semantic":[2,18,30,95],"measures":[3,55,96],"library":[4,66],"and":[5,10,27,37,67,77,92,124],"toolkit":[6,69],"are":[7,126],"robust":[8],"open-source":[9],"easy":[11],"to":[12,17,60],"use":[13],"software":[14],"solutions":[15],"dedicated":[16],"measures.":[19],"They":[20],"can":[21,70,108],"be":[22,71,109],"used":[23,72,110],"for":[24],"large-scale":[25],"computations":[26],"analyses":[28],"of":[29,41,54,94],"similarities":[31],"between":[32],"terms/concepts":[33],"defined":[34],"in":[35],"terminologies":[36],"ontologies.":[38],"comparison":[40],"entities":[42],"(e.g.":[43,80],"genes)":[44],"annotated":[45],"by":[46],"concepts":[47],"is":[48,56],"also":[49],"supported.":[50],"A":[51],"large":[52],"collection":[53],"available.":[57],"Not":[58],"limited":[59],"a":[61,98,104],"specific":[62],"application":[63],"context,":[64],"the":[65,68],"with":[73],"various":[74],"controlled":[75],"vocabularies":[76],"ontology":[78],"specifications":[79],"Open":[81],"Biomedical":[82],"Ontology,":[83],"Resource":[84],"Description":[85],"Framework).":[86],"project":[88],"targets":[89],"both":[90],"designers":[91],"practitioners":[93],"providing":[97],"JAVA":[99],"library,":[100],"as":[101,103],"well":[102],"command-line":[105],"tool":[106],"that":[107],"on":[111],"personal":[112],"computers":[113],"or":[114],"computer":[115],"clusters.":[116],"AVAILABILITY":[117],"AND":[118],"IMPLEMENTATION:":[119],"Downloads,":[120],"documentation,":[121],"tutorials,":[122],"evaluation":[123],"support":[125],"available":[127],"at":[128],"http://www.semantic-measures-library.org.":[129]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":21},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
