{"id":"https://openalex.org/W2143627094","doi":"https://doi.org/10.1093/bioinformatics/btt576","title":"iPEAP: integrating multiple omics and genetic data for pathway enrichment analysis","display_name":"iPEAP: integrating multiple omics and genetic data for pathway enrichment analysis","publication_year":2013,"publication_date":"2013-10-03","ids":{"openalex":"https://openalex.org/W2143627094","doi":"https://doi.org/10.1093/bioinformatics/btt576","mag":"2143627094","pmid":"https://pubmed.ncbi.nlm.nih.gov/24092766"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt576","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt576","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/5/737/48919116/bioinformatics_30_5_737.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/5/737/48919116/bioinformatics_30_5_737.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039407625","display_name":"Haoqi Sun","orcid":"https://orcid.org/0000-0002-5041-8312"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Haoqi Sun","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I16365422","https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100672255","display_name":"Haiping Wang","orcid":"https://orcid.org/0000-0002-5515-9452"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Haiping Wang","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I16365422","https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100749287","display_name":"Ruixin Zhu","orcid":"https://orcid.org/0000-0002-5070-6453"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Ruixin Zhu","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","TONGJI UNIVERSITY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I16365422","https://openalex.org/I165733156"]},{"raw_affiliation_string":"TONGJI UNIVERSITY","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060948898","display_name":"Kailin Tang","orcid":"https://orcid.org/0000-0002-0508-6056"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Kailin Tang","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","TONGJI UNIVERSITY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I16365422","https://openalex.org/I165733156"]},{"raw_affiliation_string":"TONGJI UNIVERSITY","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103038826","display_name":"Qin Gong","orcid":"https://orcid.org/0000-0002-6016-7254"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Qin Gong","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","TONGJI UNIVERSITY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I16365422","https://openalex.org/I165733156"]},{"raw_affiliation_string":"TONGJI UNIVERSITY","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029528457","display_name":"Juan Cui","orcid":"https://orcid.org/0000-0001-6581-6850"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Juan Cui","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I16365422","https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101574641","display_name":"Zhiwei Cao","orcid":"https://orcid.org/0000-0003-1165-1928"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Zhiwei Cao","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","TONGJI UNIVERSITY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I16365422","https://openalex.org/I165733156"]},{"raw_affiliation_string":"TONGJI UNIVERSITY","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100453248","display_name":"Qi Liu","orcid":"https://orcid.org/0000-0003-2578-1221"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Qi Liu","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","TONGJI UNIVERSITY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, 2Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and 3Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I16365422","https://openalex.org/I165733156"]},{"raw_affiliation_string":"TONGJI UNIVERSITY","institution_ids":["https://openalex.org/I116953780"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100453248","https://openalex.org/A5101574641"],"corresponding_institution_ids":["https://openalex.org/I116953780","https://openalex.org/I16365422","https://openalex.org/I165733156"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.2012,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.88140783,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"5","first_page":"737","last_page":"739"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9836999773979187,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9836999773979187,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.003000000026077032,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.002199999988079071,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6880444288253784},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5611020922660828},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5209368467330933},{"id":"https://openalex.org/keywords/pathway-analysis","display_name":"Pathway analysis","score":0.4966455101966858},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.43659648299217224},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4171207547187805},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33207178115844727},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24176061153411865},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.17266729474067688},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08517828583717346}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6880444288253784},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5611020922660828},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5209368467330933},{"id":"https://openalex.org/C2779230013","wikidata":"https://www.wikidata.org/wiki/Q25303877","display_name":"Pathway analysis","level":4,"score":0.4966455101966858},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.43659648299217224},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4171207547187805},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33207178115844727},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24176061153411865},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.17266729474067688},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08517828583717346},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt576","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt576","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/5/737/48919116/bioinformatics_30_5_737.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24092766","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24092766","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt576","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt576","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/5/737/48919116/bioinformatics_30_5_737.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G6404022415","display_name":null,"funder_award_id":"31100956","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6503164741","display_name":null,"funder_award_id":"2012AA020405","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6664640287","display_name":null,"funder_award_id":"61173117","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6883653490","display_name":null,"funder_award_id":"2012AA011005","funder_id":"https://openalex.org/F4320335773","funder_display_name":"National High-tech Research and Development Program"},{"id":"https://openalex.org/G7905196072","display_name":null,"funder_award_id":"2012AA011005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335773","display_name":"National High-tech Research and Development Program","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2143627094.pdf","grobid_xml":"https://content.openalex.org/works/W2143627094.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W611184895","https://openalex.org/W1535641839","https://openalex.org/W2057015734","https://openalex.org/W2069870183","https://openalex.org/W2076800521","https://openalex.org/W2080218141","https://openalex.org/W2091515885","https://openalex.org/W2105924489","https://openalex.org/W2113640060","https://openalex.org/W2114268578","https://openalex.org/W2130410032","https://openalex.org/W2133971386","https://openalex.org/W2138790992","https://openalex.org/W2146511318","https://openalex.org/W2146637150","https://openalex.org/W2152768535","https://openalex.org/W2154972152","https://openalex.org/W2155158051","https://openalex.org/W2166711199","https://openalex.org/W2167540852","https://openalex.org/W6682742349"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W2745001401","https://openalex.org/W4321353415","https://openalex.org/W2130974462","https://openalex.org/W972276598","https://openalex.org/W4246352526","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W2154972152","https://openalex.org/W2996680049"],"abstract_inverted_index":{"UNLABELLED:":[0],"A":[1],"challenge":[2],"in":[3,15,33,47,97],"biodata":[4],"analysis":[5],"is":[6,20,40,134],"to":[7,42,90],"understand":[8],"the":[9,23,88,104,113],"underlying":[10],"phenomena":[11],"among":[12],"many":[13],"interactions":[14],"signaling":[16],"pathways.":[17],"Such":[18],"study":[19],"formulated":[21],"as":[22,101,103],"pathway":[24,93],"enrichment":[25,94,128],"analysis,":[26],"which":[27,72],"identifies":[28],"relevant":[29],"pathways":[30,55],"functional":[31],"enriched":[32],"high-throughput":[34,99],"data.":[35],"The":[36],"question":[37],"faced":[38],"here":[39],"how":[41],"analyze":[43],"different":[44,98,108],"data":[45,58,79,126],"types":[46,124],"a":[48,81],"unified":[49,82],"and":[50,77,120,127],"integrative":[51,66],"way":[52],"by":[53],"characterizing":[54],"that":[56],"these":[57],"simultaneously":[59],"reveal.":[60],"To":[61],"this":[62],"end,":[63],"we":[64],"developed":[65],"Pathway":[67],"Enrichment":[68],"Analysis":[69],"Platform,":[70],"iPEAP,":[71],"handles":[73],"transcriptomics,":[74],"proteomics,":[75],"metabolomics":[76],"GWAS":[78],"under":[80],"aggregation":[83],"schema.":[84],"iPEAP":[85,133],"emphasizes":[86],"on":[87],"ability":[89],"aggregate":[91],"various":[92],"results":[95],"generated":[96],"experiments,":[100],"well":[102],"quantitative":[105],"measurements":[106],"of":[107,122,125],"ranking":[109],"results,":[110],"thus":[111],"providing":[112],"first":[114],"benchmark":[115],"platform":[116],"for":[117],"integration,":[118],"comparison":[119],"evaluation":[121],"multiple":[123],"methods.":[129],"AVAILABILITY":[130],"AND":[131],"IMPLEMENTATION:":[132],"freely":[135],"available":[136],"at":[137],"http://www.tongji.edu.cn/\u223cqiliu/ipeap.html.":[138]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
