{"id":"https://openalex.org/W2148661959","doi":"https://doi.org/10.1093/bioinformatics/btt568","title":"BooleSim: an interactive Boolean network simulator","display_name":"BooleSim: an interactive Boolean network simulator","publication_year":2013,"publication_date":"2013-09-29","ids":{"openalex":"https://openalex.org/W2148661959","doi":"https://doi.org/10.1093/bioinformatics/btt568","mag":"2148661959","pmid":"https://pubmed.ncbi.nlm.nih.gov/24078712"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt568","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt568","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/131/48913111/bioinformatics_30_1_131.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/131/48913111/bioinformatics_30_1_131.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102024433","display_name":"Matthias B\u00f6ck","orcid":"https://orcid.org/0000-0002-8631-7310"},"institutions":[{"id":"https://openalex.org/I162827531","display_name":"Indian Institute of Technology Bombay","ror":"https://ror.org/02qyf5152","country_code":"IN","type":"education","lineage":["https://openalex.org/I162827531"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE","IN"],"is_corresponding":true,"raw_author_name":"Matthias Bock","raw_affiliation_strings":["1 Department of Biology, Theoretical Biophysics, Humboldt-Universit\u00e4t zu Berlin, 10115 Berlin, Germany and 2Chemical Engineering Department, Indian Institute of Technology Bombay, Mumbai 400 076, India"],"affiliations":[{"raw_affiliation_string":"1 Department of Biology, Theoretical Biophysics, Humboldt-Universit\u00e4t zu Berlin, 10115 Berlin, Germany and 2Chemical Engineering Department, Indian Institute of Technology Bombay, Mumbai 400 076, India","institution_ids":["https://openalex.org/I162827531","https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075676153","display_name":"Till Scharp","orcid":null},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I162827531","display_name":"Indian Institute of Technology Bombay","ror":"https://ror.org/02qyf5152","country_code":"IN","type":"education","lineage":["https://openalex.org/I162827531"]}],"countries":["DE","IN"],"is_corresponding":false,"raw_author_name":"Till Scharp","raw_affiliation_strings":["1 Department of Biology, Theoretical Biophysics, Humboldt-Universit\u00e4t zu Berlin, 10115 Berlin, Germany and 2Chemical Engineering Department, Indian Institute of Technology Bombay, Mumbai 400 076, India"],"affiliations":[{"raw_affiliation_string":"1 Department of Biology, Theoretical Biophysics, Humboldt-Universit\u00e4t zu Berlin, 10115 Berlin, Germany and 2Chemical Engineering Department, Indian Institute of Technology Bombay, Mumbai 400 076, India","institution_ids":["https://openalex.org/I162827531","https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074491874","display_name":"Chaitanya Talnikar","orcid":null},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I162827531","display_name":"Indian Institute of Technology Bombay","ror":"https://ror.org/02qyf5152","country_code":"IN","type":"education","lineage":["https://openalex.org/I162827531"]}],"countries":["DE","IN"],"is_corresponding":false,"raw_author_name":"Chaitanya Talnikar","raw_affiliation_strings":["1 Department of Biology, Theoretical Biophysics, Humboldt-Universit\u00e4t zu Berlin, 10115 Berlin, Germany and 2Chemical Engineering Department, Indian Institute of Technology Bombay, Mumbai 400 076, India"],"affiliations":[{"raw_affiliation_string":"1 Department of Biology, Theoretical Biophysics, Humboldt-Universit\u00e4t zu Berlin, 10115 Berlin, Germany and 2Chemical Engineering Department, Indian Institute of Technology Bombay, Mumbai 400 076, India","institution_ids":["https://openalex.org/I162827531","https://openalex.org/I39343248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003799374","display_name":"Edda Klipp","orcid":"https://orcid.org/0000-0002-0567-7075"},"institutions":[{"id":"https://openalex.org/I162827531","display_name":"Indian Institute of Technology Bombay","ror":"https://ror.org/02qyf5152","country_code":"IN","type":"education","lineage":["https://openalex.org/I162827531"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE","IN"],"is_corresponding":false,"raw_author_name":"Edda Klipp","raw_affiliation_strings":["1 Department of Biology, Theoretical Biophysics, Humboldt-Universit\u00e4t zu Berlin, 10115 Berlin, Germany and 2Chemical Engineering Department, Indian Institute of Technology Bombay, Mumbai 400 076, India"],"affiliations":[{"raw_affiliation_string":"1 Department of Biology, Theoretical Biophysics, Humboldt-Universit\u00e4t zu Berlin, 10115 Berlin, Germany and 2Chemical Engineering Department, Indian Institute of Technology Bombay, Mumbai 400 076, India","institution_ids":["https://openalex.org/I162827531","https://openalex.org/I39343248"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5102024433"],"corresponding_institution_ids":["https://openalex.org/I162827531","https://openalex.org/I39343248"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0481,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.771496,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"30","issue":"1","first_page":"131","last_page":"132"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8056550025939941},{"id":"https://openalex.org/keywords/and-inverter-graph","display_name":"And-inverter graph","score":0.6005832552909851},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5579558610916138},{"id":"https://openalex.org/keywords/boolean-expression","display_name":"Boolean expression","score":0.5544064044952393},{"id":"https://openalex.org/keywords/boolean-network","display_name":"Boolean network","score":0.5532354116439819},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5421607494354248},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5167223811149597},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4763786494731903},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4312473237514496},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.41661515831947327},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.41034919023513794},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.3351668119430542},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3040812611579895},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.15549615025520325}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8056550025939941},{"id":"https://openalex.org/C196836630","wikidata":"https://www.wikidata.org/wiki/Q4753279","display_name":"And-inverter graph","level":4,"score":0.6005832552909851},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5579558610916138},{"id":"https://openalex.org/C158465420","wikidata":"https://www.wikidata.org/wiki/Q1979515","display_name":"Boolean expression","level":3,"score":0.5544064044952393},{"id":"https://openalex.org/C134444547","wikidata":"https://www.wikidata.org/wiki/Q585230","display_name":"Boolean network","level":3,"score":0.5532354116439819},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5421607494354248},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5167223811149597},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4763786494731903},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4312473237514496},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.41661515831947327},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.41034919023513794},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.3351668119430542},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3040812611579895},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.15549615025520325},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btt568","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt568","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/131/48913111/bioinformatics_30_1_131.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24078712","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24078712","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dsapce.library.iitb.ac.in:100/16420","is_oa":false,"landing_page_url":"http://dspace.library.iitb.ac.in/jspui/handle/100/16420","pdf_url":null,"source":{"id":"https://openalex.org/S4306400899","display_name":"DSpace (IIT Bombay)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I162827531","host_organization_name":"Indian Institute of Technology Bombay","host_organization_lineage":["https://openalex.org/I162827531"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:dspace.library.iitb.ac.in:100/16420","is_oa":false,"landing_page_url":"http://doi.org/10.1093/bioinformatics/btt568","pdf_url":null,"source":{"id":"https://openalex.org/S4306400899","display_name":"DSpace (IIT Bombay)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I162827531","host_organization_name":"Indian Institute of Technology Bombay","host_organization_lineage":["https://openalex.org/I162827531"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt568","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt568","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/131/48913111/bioinformatics_30_1_131.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8387710000","display_name":null,"funder_award_id":"FKZ0315584","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2148661959.pdf","grobid_xml":"https://content.openalex.org/works/W2148661959.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1971224531","https://openalex.org/W2092755129","https://openalex.org/W2103454055","https://openalex.org/W2103723044","https://openalex.org/W2107057834","https://openalex.org/W2132935366","https://openalex.org/W2170776520","https://openalex.org/W2322414927","https://openalex.org/W6700785831"],"related_works":["https://openalex.org/W2109998394","https://openalex.org/W3141532631","https://openalex.org/W2131164334","https://openalex.org/W1991822629","https://openalex.org/W2105128170","https://openalex.org/W2246807618","https://openalex.org/W2106622045","https://openalex.org/W2995277268","https://openalex.org/W2061512596","https://openalex.org/W2011175857"],"abstract_inverted_index":{"BooleSim":[0],"is":[1],"free":[2],"software":[3],"and":[4],"can":[5],"be":[6],"downloaded":[7],"from":[8],"GitHub":[9],"(https://github.com/matthiasbock/BooleSim).":[10],"Online":[11],"version":[12],"available":[13],"at":[14],"http://rumo.biologie.hu-berlin.de/boolesim/.":[15]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
