{"id":"https://openalex.org/W2121475945","doi":"https://doi.org/10.1093/bioinformatics/btt548","title":"BSeQC: quality control of bisulfite sequencing experiments","display_name":"BSeQC: quality control of bisulfite sequencing experiments","publication_year":2013,"publication_date":"2013-09-23","ids":{"openalex":"https://openalex.org/W2121475945","doi":"https://doi.org/10.1093/bioinformatics/btt548","mag":"2121475945","pmid":"https://pubmed.ncbi.nlm.nih.gov/24064417"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt548","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt548","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/24/3227/48894212/bioinformatics_29_24_3227.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/24/3227/48894212/bioinformatics_29_24_3227.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065271113","display_name":"Xueqiu Lin","orcid":"https://orcid.org/0000-0001-8706-9657"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Xueqiu Lin","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068486677","display_name":"Deqiang Sun","orcid":"https://orcid.org/0000-0002-1136-8551"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Deqiang Sun","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067810825","display_name":"Blanca Rodr\u00edguez","orcid":"https://orcid.org/0000-0001-6361-3339"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Benjamin Rodriguez","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069760097","display_name":"Qian Zhao","orcid":"https://orcid.org/0000-0003-2244-6516"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Qian Zhao","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016231964","display_name":"Hanfei Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Hanfei Sun","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007650371","display_name":"Yong Zhang","orcid":"https://orcid.org/0000-0001-6316-2734"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yong Zhang","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I181547552"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004367276","display_name":"Wei Li","orcid":"https://orcid.org/0000-0002-0697-5875"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Wei Li","raw_affiliation_strings":["1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, 2Dan L. Duncan Cancer Center and 3Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I181547552"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5065271113"],"corresponding_institution_ids":["https://openalex.org/I116953780","https://openalex.org/I181547552"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.5326,"has_fulltext":false,"cited_by_count":47,"citation_normalized_percentile":{"value":0.89746807,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"29","issue":"24","first_page":"3227","last_page":"3229"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9376000165939331,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11928","display_name":"Genetic Syndromes and Imprinting","score":0.919700026512146,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bisulfite","display_name":"Bisulfite","score":0.8100353479385376},{"id":"https://openalex.org/keywords/control","display_name":"Control (management)","score":0.5973865389823914},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5935616493225098},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5744456052780151},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4218237102031708},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22308769822120667},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1614149510860443},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.11997044086456299},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11501127481460571},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0849168598651886}],"concepts":[{"id":"https://openalex.org/C2775959680","wikidata":"https://www.wikidata.org/wiki/Q2718222","display_name":"Bisulfite","level":5,"score":0.8100353479385376},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.5973865389823914},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5935616493225098},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5744456052780151},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4218237102031708},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22308769822120667},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1614149510860443},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.11997044086456299},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11501127481460571},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0849168598651886},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013234","descriptor_name":"Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013234","descriptor_name":"Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013234","descriptor_name":"Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt548","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt548","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/24/3227/48894212/bioinformatics_29_24_3227.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24064417","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24064417","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3233247","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3842756","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt548","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt548","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/24/3227/48894212/bioinformatics_29_24_3227.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2121475945.pdf","grobid_xml":"https://content.openalex.org/works/W2121475945.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1963590871","https://openalex.org/W1965555277","https://openalex.org/W1984562049","https://openalex.org/W1985604190","https://openalex.org/W2004078197","https://openalex.org/W2039053594","https://openalex.org/W2059099579","https://openalex.org/W2074746593","https://openalex.org/W2105479306","https://openalex.org/W2106889224","https://openalex.org/W2125154191","https://openalex.org/W2137586531","https://openalex.org/W2150936392","https://openalex.org/W2171620714"],"related_works":["https://openalex.org/W2384667405","https://openalex.org/W2389266787","https://openalex.org/W2363885542","https://openalex.org/W2387206255","https://openalex.org/W2355570285","https://openalex.org/W2364958354","https://openalex.org/W2352797113","https://openalex.org/W2372137583","https://openalex.org/W1548050717","https://openalex.org/W2374872591"],"abstract_inverted_index":{"BSeQC":[0],"is":[1],"freely":[2],"available":[3],"at:":[4],"http://code.google.com/p/bseqc/.":[5]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}