{"id":"https://openalex.org/W2161028234","doi":"https://doi.org/10.1093/bioinformatics/btt522","title":"SOAPfusion: a robust and effective computational fusion discovery tool for RNA-seq reads","display_name":"SOAPfusion: a robust and effective computational fusion discovery tool for RNA-seq reads","publication_year":2013,"publication_date":"2013-10-11","ids":{"openalex":"https://openalex.org/W2161028234","doi":"https://doi.org/10.1093/bioinformatics/btt522","mag":"2161028234","pmid":"https://pubmed.ncbi.nlm.nih.gov/24123671"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt522","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt522","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027319208","display_name":"Jacob Wu","orcid":"https://orcid.org/0000-0002-2327-4157"},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK","HK","SA"],"is_corresponding":false,"raw_author_name":"Jikun Wu","raw_affiliation_strings":["1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I185163786","https://openalex.org/I124055696","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100749045","display_name":"Wenqian Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]},{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]}],"countries":["DK","HK","SA"],"is_corresponding":false,"raw_author_name":"Wenqian Zhang","raw_affiliation_strings":["1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I185163786","https://openalex.org/I124055696","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000121869","display_name":"Songbo Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK","HK","SA"],"is_corresponding":false,"raw_author_name":"Songbo Huang","raw_affiliation_strings":["1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I185163786","https://openalex.org/I124055696","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063706848","display_name":"Zengquan He","orcid":null},"institutions":[{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]}],"countries":["DK","HK","SA"],"is_corresponding":false,"raw_author_name":"Zengquan He","raw_affiliation_strings":["1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I185163786","https://openalex.org/I124055696","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087211062","display_name":"Yanbing Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]}],"countries":["DK","HK","SA"],"is_corresponding":false,"raw_author_name":"Yanbing Cheng","raw_affiliation_strings":["1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I185163786","https://openalex.org/I124055696","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111964102","display_name":"Jun Wang","orcid":"https://orcid.org/0009-0008-8475-2934"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK","HK","SA"],"is_corresponding":false,"raw_author_name":"Jun Wang","raw_affiliation_strings":["1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I185163786","https://openalex.org/I124055696","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077116003","display_name":"Tak\u2010Wah Lam","orcid":"https://orcid.org/0000-0003-4676-8587"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]}],"countries":["DK","HK","SA"],"is_corresponding":false,"raw_author_name":"Tak-Wah Lam","raw_affiliation_strings":["1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I185163786","https://openalex.org/I124055696","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037756555","display_name":"Zhiyu Peng","orcid":"https://orcid.org/0000-0003-2349-750X"},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK","HK","SA"],"is_corresponding":true,"raw_author_name":"Zhiyu Peng","raw_affiliation_strings":["1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I185163786","https://openalex.org/I124055696","https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110500992","display_name":"Siu\u2010Ming Yiu","orcid":null},"institutions":[{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]},{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK","HK","SA"],"is_corresponding":true,"raw_author_name":"Siu-Ming Yiu","raw_affiliation_strings":["1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, The University of Hong Kong, Hong Kong, China, 2BGI-Shenzhen, Shenzhen, China, 3Department of Biology, University of Copenhagen, Copenhagen, Denmark, 4King Abdulaziz University, Jeddah, Saudi Arabia, 5The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen and 6Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I185163786","https://openalex.org/I124055696","https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5037756555","https://openalex.org/A5110500992"],"corresponding_institution_ids":["https://openalex.org/I124055696","https://openalex.org/I185163786","https://openalex.org/I2801134892","https://openalex.org/I889458895"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.7889,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.851581,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"29","issue":"23","first_page":"2971","last_page":"2978"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.625016450881958},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6182669401168823},{"id":"https://openalex.org/keywords/fusion-gene","display_name":"Fusion gene","score":0.5543229579925537},{"id":"https://openalex.org/keywords/sanger-sequencing","display_name":"Sanger sequencing","score":0.48476332426071167},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.47142332792282104},{"id":"https://openalex.org/keywords/fusion","display_name":"Fusion","score":0.4456096291542053},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.3904370367527008},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35967355966567993},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.295973002910614},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29455551505088806},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19511106610298157},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.15968060493469238},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.0902734100818634}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.625016450881958},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6182669401168823},{"id":"https://openalex.org/C111829193","wikidata":"https://www.wikidata.org/wiki/Q1108970","display_name":"Fusion gene","level":3,"score":0.5543229579925537},{"id":"https://openalex.org/C76818968","wikidata":"https://www.wikidata.org/wiki/Q181940","display_name":"Sanger sequencing","level":4,"score":0.48476332426071167},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.47142332792282104},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.4456096291542053},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.3904370367527008},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35967355966567993},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.295973002910614},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29455551505088806},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19511106610298157},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.15968060493469238},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0902734100818634},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt522","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt522","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24123671","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24123671","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/fe00abc4-ad69-481c-8b47-5651dcce765e","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/fe00abc4-ad69-481c-8b47-5651dcce765e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wu , J , Zhang , W , Huang , S , He , Z , Cheng , Y , Wang , J , Lam , T-W , Peng , Z & Yiu , S-M 2013 , ' SOAPfusion : a robust and effective computational fusion discovery tool for RNA-seq reads ' , Bioinformatics , vol. 29 , no. 23 , pp. 2971-2978 . https://doi.org/10.1093/bioinformatics/btt522","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1968002146","https://openalex.org/W1968174630","https://openalex.org/W1981347911","https://openalex.org/W2000730583","https://openalex.org/W2001806905","https://openalex.org/W2002875415","https://openalex.org/W2009129826","https://openalex.org/W2011474502","https://openalex.org/W2015037628","https://openalex.org/W2024976844","https://openalex.org/W2027963144","https://openalex.org/W2029623390","https://openalex.org/W2035017134","https://openalex.org/W2041544905","https://openalex.org/W2057271193","https://openalex.org/W2064469303","https://openalex.org/W2082534286","https://openalex.org/W2087016913","https://openalex.org/W2088612061","https://openalex.org/W2089279975","https://openalex.org/W2103569192","https://openalex.org/W2107903949","https://openalex.org/W2112113834","https://openalex.org/W2114289944","https://openalex.org/W2117112774","https://openalex.org/W2125785650","https://openalex.org/W2126144698","https://openalex.org/W2129495613","https://openalex.org/W2129713651","https://openalex.org/W2129843621","https://openalex.org/W2133870323","https://openalex.org/W2139399606","https://openalex.org/W2139760555","https://openalex.org/W2141244898","https://openalex.org/W2142922493","https://openalex.org/W2154431984","https://openalex.org/W2157160484","https://openalex.org/W2166422007","https://openalex.org/W2169810552","https://openalex.org/W2170500510","https://openalex.org/W4211195653","https://openalex.org/W4255988860"],"related_works":["https://openalex.org/W2805859037","https://openalex.org/W2403609377","https://openalex.org/W2041048994","https://openalex.org/W4313342334","https://openalex.org/W4225751448","https://openalex.org/W4313584754","https://openalex.org/W2276490703","https://openalex.org/W3107980954","https://openalex.org/W3134891899","https://openalex.org/W3210327416"],"abstract_inverted_index":{"We":[0],"present":[1],"a":[2],"novel":[3,61],"tool":[4],"SOAPfusion":[5,13,58,84],"for":[6,18],"fusion":[7,19,62,98],"discovery":[8,20],"with":[9,21,92],"paired-end":[10],"RNA-Seq":[11],"reads.":[12],"is":[14,32,101],"accurate":[15],"and":[16,69,106],"efficient":[17],"high":[22],"sensitivity":[23],"(\u226593%),":[24],"low":[25,34,45],"false-positive":[26],"rate":[27],"(\u22641.36%),":[28],"even":[29],"the":[30],"coverage":[31],"as":[33,35],"10\u00d7,":[36],"highlighting":[37],"its":[38],"ability":[39],"to":[40,87,103],"detect":[41],"fusions":[42],"efficiently":[43],"at":[44],"sequencing":[46],"cost.":[47],"From":[48],"real":[49],"data":[50],"of":[51,97],"Universal":[52],"Human":[53],"Reference":[54],"RNA":[55],"(UHRR)":[56],"samples,":[57],"detected":[59],"7":[60],"genes,":[63],"more":[64],"than":[65],"other":[66],"existing":[67],"tools":[68],"all":[70],"genes":[71],"have":[72],"been":[73],"validated":[74],"through":[75],"reverse":[76],"transcription-polymerase":[77],"chain":[78],"reaction":[79],"followed":[80],"by":[81],"Sanger":[82],"sequencing.":[83],"thus":[85],"proves":[86],"be":[88],"an":[89],"effective":[90],"method":[91],"precise":[93],"applicability":[94],"in":[95],"search":[96],"transcripts,":[99],"which":[100],"advantageous":[102],"accelerate":[104],"pathological":[105],"therapeutic":[107],"cancer":[108],"studies.":[109]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-17T09:09:15.849793","created_date":"2025-10-10T00:00:00"}