{"id":"https://openalex.org/W2128791609","doi":"https://doi.org/10.1093/bioinformatics/btt516","title":"An integrated computational approach for metabolic flux analysis coupled with inference of tandem-MS collisional fragments","display_name":"An integrated computational approach for metabolic flux analysis coupled with inference of tandem-MS collisional fragments","publication_year":2013,"publication_date":"2013-10-10","ids":{"openalex":"https://openalex.org/W2128791609","doi":"https://doi.org/10.1093/bioinformatics/btt516","mag":"2128791609","pmid":"https://pubmed.ncbi.nlm.nih.gov/24123514"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt516","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt516","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/23/3045/48892580/bioinformatics_29_23_3045.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/23/3045/48892580/bioinformatics_29_23_3045.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050245796","display_name":"Naama Tepper","orcid":null},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]},{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL","US"],"is_corresponding":true,"raw_author_name":"Naama Tepper","raw_affiliation_strings":["1 Department of Computer Science, Technion\u2013Israel Institute of Technology, Haifa 32000, Israel and 2Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Technion\u2013Israel Institute of Technology, Haifa 32000, Israel and 2Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA","institution_ids":["https://openalex.org/I174306211","https://openalex.org/I20089843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071192083","display_name":"Tomer Shlomi","orcid":"https://orcid.org/0000-0003-3491-5156"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]},{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Tomer Shlomi","raw_affiliation_strings":["1 Department of Computer Science, Technion\u2013Israel Institute of Technology, Haifa 32000, Israel and 2Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Technion\u2013Israel Institute of Technology, Haifa 32000, Israel and 2Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA","institution_ids":["https://openalex.org/I174306211","https://openalex.org/I20089843"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5050245796"],"corresponding_institution_ids":["https://openalex.org/I174306211","https://openalex.org/I20089843"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2924,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.62116707,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"29","issue":"23","first_page":"3045","last_page":"3052"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/flux","display_name":"Flux (metallurgy)","score":0.7275863885879517},{"id":"https://openalex.org/keywords/metabolic-flux-analysis","display_name":"Metabolic flux analysis","score":0.7026851177215576},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6312300562858582},{"id":"https://openalex.org/keywords/tandem-mass-spectrometry","display_name":"Tandem mass spectrometry","score":0.5765237808227539},{"id":"https://openalex.org/keywords/metabolite","display_name":"Metabolite","score":0.5026991367340088},{"id":"https://openalex.org/keywords/tandem","display_name":"Tandem","score":0.4864327907562256},{"id":"https://openalex.org/keywords/isotope","display_name":"Isotope","score":0.46314072608947754},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4604109227657318},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.44251322746276855},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4373958706855774},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.4326990842819214},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.4319014549255371},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37853020429611206},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3746369779109955},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.27793267369270325},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.20966872572898865},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15596801042556763},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.130734384059906},{"id":"https://openalex.org/keywords/metabolism","display_name":"Metabolism","score":0.12529972195625305},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11270448565483093},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.09338602423667908}],"concepts":[{"id":"https://openalex.org/C68709404","wikidata":"https://www.wikidata.org/wiki/Q1134475","display_name":"Flux (metallurgy)","level":2,"score":0.7275863885879517},{"id":"https://openalex.org/C160941953","wikidata":"https://www.wikidata.org/wiki/Q6822342","display_name":"Metabolic flux analysis","level":3,"score":0.7026851177215576},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6312300562858582},{"id":"https://openalex.org/C31827203","wikidata":"https://www.wikidata.org/wiki/Q874296","display_name":"Tandem mass spectrometry","level":3,"score":0.5765237808227539},{"id":"https://openalex.org/C2777477808","wikidata":"https://www.wikidata.org/wiki/Q407595","display_name":"Metabolite","level":2,"score":0.5026991367340088},{"id":"https://openalex.org/C2777814067","wikidata":"https://www.wikidata.org/wiki/Q1752317","display_name":"Tandem","level":2,"score":0.4864327907562256},{"id":"https://openalex.org/C164304813","wikidata":"https://www.wikidata.org/wiki/Q25276","display_name":"Isotope","level":2,"score":0.46314072608947754},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4604109227657318},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.44251322746276855},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4373958706855774},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.4326990842819214},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.4319014549255371},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37853020429611206},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3746369779109955},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.27793267369270325},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.20966872572898865},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15596801042556763},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.130734384059906},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.12529972195625305},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11270448565483093},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.09338602423667908},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002247","descriptor_name":"Carbon Isotopes","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D002247","descriptor_name":"Carbon Isotopes","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D002247","descriptor_name":"Carbon Isotopes","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D002247","descriptor_name":"Carbon Isotopes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002247","descriptor_name":"Carbon Isotopes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002247","descriptor_name":"Carbon Isotopes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005943","descriptor_name":"Gluconeogenesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005943","descriptor_name":"Gluconeogenesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005943","descriptor_name":"Gluconeogenesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007553","descriptor_name":"Isotope Labeling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007553","descriptor_name":"Isotope Labeling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007553","descriptor_name":"Isotope Labeling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064688","descriptor_name":"Metabolic Flux Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064688","descriptor_name":"Metabolic Flux Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064688","descriptor_name":"Metabolic Flux Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt516","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt516","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/23/3045/48892580/bioinformatics_29_23_3045.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24123514","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24123514","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt516","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt516","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/23/3045/48892580/bioinformatics_29_23_3045.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128791609.pdf","grobid_xml":"https://content.openalex.org/works/W2128791609.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W134993818","https://openalex.org/W1989845358","https://openalex.org/W1992170087","https://openalex.org/W1994316609","https://openalex.org/W2005500623","https://openalex.org/W2008204246","https://openalex.org/W2008421457","https://openalex.org/W2009974450","https://openalex.org/W2014323212","https://openalex.org/W2015706901","https://openalex.org/W2026062081","https://openalex.org/W2027476872","https://openalex.org/W2044354987","https://openalex.org/W2048295028","https://openalex.org/W2048374178","https://openalex.org/W2058701510","https://openalex.org/W2059902696","https://openalex.org/W2060701592","https://openalex.org/W2060974253","https://openalex.org/W2076863223","https://openalex.org/W2084094917","https://openalex.org/W2087490875","https://openalex.org/W2092493462","https://openalex.org/W2114127225","https://openalex.org/W2120900694","https://openalex.org/W2136597104","https://openalex.org/W2160079005","https://openalex.org/W2316274763","https://openalex.org/W6605435894"],"related_works":["https://openalex.org/W4386071235","https://openalex.org/W2156522344","https://openalex.org/W2061647751","https://openalex.org/W2888916199","https://openalex.org/W3197240279","https://openalex.org/W2129022886","https://openalex.org/W1574470162","https://openalex.org/W3089685828","https://openalex.org/W2341681417","https://openalex.org/W2126267872"],"abstract_inverted_index":{"Here":[0],"we":[1],"show":[2],"that":[3,32,55],"MS/MS":[4,60,80],"data":[5,81],"could":[6],"also":[7],"be":[8],"used":[9],"to":[10,65],"improve":[11,67],"flux":[12,29,68],"inference":[13],"even":[14],"when":[15],"the":[16,41,48],"positional":[17],"origin":[18],"of":[19,52,75],"fragments":[20,54],"is":[21,63],"unknown.":[22],"We":[23],"develop":[24],"a":[25,72],"novel":[26],"method,":[27],"metabolic":[28,44],"analysis/unknown":[30],"fragments,":[31],"extends":[33],"on":[34],"standard":[35],"MFA":[36],"and":[37,77],"jointly":[38],"searches":[39],"for":[40],"most":[42,49],"likely":[43],"fluxes":[45],"together":[46],"with":[47],"plausible":[50],"position":[51],"collisional":[53],"would":[56],"optimally":[57],"match":[58],"measured":[59],"data.":[61],"MFA/UF":[62],"shown":[64],"markedly":[66],"prediction":[69],"accuracy":[70],"in":[71,82],"simulation":[73],"model":[74],"gluconeogenesis":[76],"using":[78],"experimental":[79],"Bacillus":[83],"subtilis.":[84]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}