{"id":"https://openalex.org/W2142016317","doi":"https://doi.org/10.1093/bioinformatics/btt474","title":"DNorm: disease name normalization with pairwise learning to rank","display_name":"DNorm: disease name normalization with pairwise learning to rank","publication_year":2013,"publication_date":"2013-08-21","ids":{"openalex":"https://openalex.org/W2142016317","doi":"https://doi.org/10.1093/bioinformatics/btt474","mag":"2142016317","pmid":"https://pubmed.ncbi.nlm.nih.gov/23969135"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt474","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt474","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/22/2909/48891951/bioinformatics_29_22_2909.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/22/2909/48891951/bioinformatics_29_22_2909.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044947146","display_name":"Robert Leaman","orcid":"https://orcid.org/0000-0003-3296-5766"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Robert Leaman","raw_affiliation_strings":["1 National Center for Biotechnology Information, 8600 Rockville Pike, Bethesda, MD 20894, USA and 2Department of Biomedical Informatics, Arizona State University, 13212 East Shea Blvd, Scottsdale, AZ 85259, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Biotechnology Information, 8600 Rockville Pike, Bethesda, MD 20894, USA and 2Department of Biomedical Informatics, Arizona State University, 13212 East Shea Blvd, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008126200","display_name":"Rezarta Islamaj","orcid":"https://orcid.org/0000-0001-5651-1860"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rezarta Islamaj Do\u011fan","raw_affiliation_strings":["1 National Center for Biotechnology Information, 8600 Rockville Pike, Bethesda, MD 20894, USA and 2Department of Biomedical Informatics, Arizona State University, 13212 East Shea Blvd, Scottsdale, AZ 85259, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Biotechnology Information, 8600 Rockville Pike, Bethesda, MD 20894, USA and 2Department of Biomedical Informatics, Arizona State University, 13212 East Shea Blvd, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083081872","display_name":"Zhiyong Lu","orcid":"https://orcid.org/0000-0001-9998-916X"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiyong Lu","raw_affiliation_strings":["1 National Center for Biotechnology Information, 8600 Rockville Pike, Bethesda, MD 20894, USA and 2Department of Biomedical Informatics, Arizona State University, 13212 East Shea Blvd, Scottsdale, AZ 85259, USA"],"affiliations":[{"raw_affiliation_string":"1 National Center for Biotechnology Information, 8600 Rockville Pike, Bethesda, MD 20894, USA and 2Department of Biomedical Informatics, Arizona State University, 13212 East Shea Blvd, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5044947146"],"corresponding_institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I55732556"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":15.7212,"has_fulltext":true,"cited_by_count":499,"citation_normalized_percentile":{"value":0.99469799,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"29","issue":"22","first_page":"2909","last_page":"2917"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.8443944454193115},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7510327100753784},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7303056120872498},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5490763187408447},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.5199859738349915},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.49489301443099976},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.4927869141101837},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4866648316383362},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4669220447540283},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.4127603769302368},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.3406488299369812},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.077656090259552}],"concepts":[{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.8443944454193115},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7510327100753784},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7303056120872498},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5490763187408447},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.5199859738349915},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.49489301443099976},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.4927869141101837},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4866648316383362},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4669220447540283},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.4127603769302368},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.3406488299369812},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.077656090259552},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt474","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt474","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/22/2909/48891951/bioinformatics_29_22_2909.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23969135","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23969135","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2797675","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3810844","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt474","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt474","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/22/2909/48891951/bioinformatics_29_22_2909.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.800000011920929,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142016317.pdf","grobid_xml":"https://content.openalex.org/works/W2142016317.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W99501648","https://openalex.org/W1034019924","https://openalex.org/W1483357098","https://openalex.org/W1528012351","https://openalex.org/W1532325895","https://openalex.org/W1549656520","https://openalex.org/W1550258693","https://openalex.org/W1570795998","https://openalex.org/W1964670939","https://openalex.org/W2025423507","https://openalex.org/W2032566933","https://openalex.org/W2045016337","https://openalex.org/W2061166439","https://openalex.org/W2061167720","https://openalex.org/W2074640468","https://openalex.org/W2079205800","https://openalex.org/W2081880734","https://openalex.org/W2105481534","https://openalex.org/W2107005506","https://openalex.org/W2107913399","https://openalex.org/W2109487646","https://openalex.org/W2123439964","https://openalex.org/W2123579157","https://openalex.org/W2124798372","https://openalex.org/W2126276057","https://openalex.org/W2129038679","https://openalex.org/W2129113459","https://openalex.org/W2131297983","https://openalex.org/W2133627190","https://openalex.org/W2143331230","https://openalex.org/W2147880316","https://openalex.org/W2150288223","https://openalex.org/W2152143870","https://openalex.org/W2158743996","https://openalex.org/W2159092541","https://openalex.org/W2162965868","https://openalex.org/W2168041406","https://openalex.org/W2178441628","https://openalex.org/W2186301176","https://openalex.org/W2295990020","https://openalex.org/W2405915252","https://openalex.org/W2741609678","https://openalex.org/W2781804600","https://openalex.org/W2988119488","https://openalex.org/W4206070857","https://openalex.org/W4213009331","https://openalex.org/W4250498225","https://openalex.org/W6628888145","https://openalex.org/W6632766574","https://openalex.org/W6658704000","https://openalex.org/W6675914680","https://openalex.org/W6682082992","https://openalex.org/W6686682713","https://openalex.org/W6697469132","https://openalex.org/W7048028648","https://openalex.org/W7057000052"],"related_works":["https://openalex.org/W2487162673","https://openalex.org/W2793211469","https://openalex.org/W2949152769","https://openalex.org/W4372354731","https://openalex.org/W2942366970","https://openalex.org/W2807634898","https://openalex.org/W1692008701","https://openalex.org/W2597588799","https://openalex.org/W4360593462","https://openalex.org/W2793132289"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"for":[3],"DNorm":[4],"is":[5],"available":[6,26],"at":[7],"http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/DNorm,":[8],"along":[9],"with":[10],"a":[11],"web-based":[12],"demonstration":[13],"and":[14],"links":[15],"to":[16],"the":[17],"NCBI":[18],"disease":[19],"corpus.":[20],"Results":[21],"on":[22],"PubMed":[23],"abstracts":[24],"are":[25],"in":[27],"PubTator:":[28],"http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator":[29],".":[30]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":29},{"year":2023,"cited_by_count":33},{"year":2022,"cited_by_count":49},{"year":2021,"cited_by_count":53},{"year":2020,"cited_by_count":67},{"year":2019,"cited_by_count":62},{"year":2018,"cited_by_count":42},{"year":2017,"cited_by_count":39},{"year":2016,"cited_by_count":54},{"year":2015,"cited_by_count":26},{"year":2014,"cited_by_count":24},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
