{"id":"https://openalex.org/W2132215769","doi":"https://doi.org/10.1093/bioinformatics/btt470","title":"Identification of transcription factor binding sites from ChIP-seq data at high resolution","display_name":"Identification of transcription factor binding sites from ChIP-seq data at high resolution","publication_year":2013,"publication_date":"2013-08-24","ids":{"openalex":"https://openalex.org/W2132215769","doi":"https://doi.org/10.1093/bioinformatics/btt470","mag":"2132215769","pmid":"https://pubmed.ncbi.nlm.nih.gov/23980024"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt470","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt470","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/21/2705/50745980/bioinformatics_29_21_2705.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/21/2705/50745980/bioinformatics_29_21_2705.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058679755","display_name":"Ana\u00efs F. Bardet","orcid":"https://orcid.org/0000-0003-2306-7809"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Ana\u00efs F. Bardet","raw_affiliation_strings":["Research Institute of Molecular Pathology (IMP), Institute of Molecular Biotechnology (IMBA), Vienna, Austria and Stowers Institute for Medical Research, Kansas City, MO, USA"],"affiliations":[{"raw_affiliation_string":"Research Institute of Molecular Pathology (IMP), Institute of Molecular Biotechnology (IMBA), Vienna, Austria and Stowers Institute for Medical Research, Kansas City, MO, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002913537","display_name":"Jonas Steinmann","orcid":null},"institutions":[{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]},{"id":"https://openalex.org/I125523173","display_name":"Institute of Molecular Biotechnology","ror":"https://ror.org/01zqrxf85","country_code":"AT","type":"facility","lineage":["https://openalex.org/I125523173","https://openalex.org/I138211613"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Jonas Steinmann","raw_affiliation_strings":["Institute of Molecular Biotechnology (IMBA), Vienna, Austria and","1Research Institute of Molecular Pathology (IMP), 2Institute of Molecular Biotechnology (IMBA), Vienna, Austria and 3Stowers Institute for Medical Research, Kansas City, MO, USA"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biotechnology (IMBA), Vienna, Austria and","institution_ids":["https://openalex.org/I125523173"]},{"raw_affiliation_string":"1Research Institute of Molecular Pathology (IMP), 2Institute of Molecular Biotechnology (IMBA), Vienna, Austria and 3Stowers Institute for Medical Research, Kansas City, MO, USA","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091503579","display_name":"Sangeeta Bafna","orcid":null},"institutions":[{"id":"https://openalex.org/I114131015","display_name":"Stowers Institute for Medical Research","ror":"https://ror.org/04bgfm609","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114131015"]},{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Sangeeta Bafna","raw_affiliation_strings":["Stowers Institute for Medical Research, Kansas City, MO, USA","1Research Institute of Molecular Pathology (IMP), 2Institute of Molecular Biotechnology (IMBA), Vienna, Austria and 3Stowers Institute for Medical Research, Kansas City, MO, USA"],"affiliations":[{"raw_affiliation_string":"Stowers Institute for Medical Research, Kansas City, MO, USA","institution_ids":["https://openalex.org/I114131015"]},{"raw_affiliation_string":"1Research Institute of Molecular Pathology (IMP), 2Institute of Molecular Biotechnology (IMBA), Vienna, Austria and 3Stowers Institute for Medical Research, Kansas City, MO, USA","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008803187","display_name":"Juergen A. Knoblich","orcid":"https://orcid.org/0000-0002-6751-3404"},"institutions":[{"id":"https://openalex.org/I125523173","display_name":"Institute of Molecular Biotechnology","ror":"https://ror.org/01zqrxf85","country_code":"AT","type":"facility","lineage":["https://openalex.org/I125523173","https://openalex.org/I138211613"]},{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Juergen A. Knoblich","raw_affiliation_strings":["Institute of Molecular Biotechnology (IMBA), Vienna, Austria and","1Research Institute of Molecular Pathology (IMP), 2Institute of Molecular Biotechnology (IMBA), Vienna, Austria and 3Stowers Institute for Medical Research, Kansas City, MO, USA"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biotechnology (IMBA), Vienna, Austria and","institution_ids":["https://openalex.org/I125523173"]},{"raw_affiliation_string":"1Research Institute of Molecular Pathology (IMP), 2Institute of Molecular Biotechnology (IMBA), Vienna, Austria and 3Stowers Institute for Medical Research, Kansas City, MO, USA","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007801525","display_name":"Julia Zeitlinger","orcid":"https://orcid.org/0000-0002-5172-3335"},"institutions":[{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]},{"id":"https://openalex.org/I114131015","display_name":"Stowers Institute for Medical Research","ror":"https://ror.org/04bgfm609","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114131015"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Julia Zeitlinger","raw_affiliation_strings":["Stowers Institute for Medical Research, Kansas City, MO, USA","1Research Institute of Molecular Pathology (IMP), 2Institute of Molecular Biotechnology (IMBA), Vienna, Austria and 3Stowers Institute for Medical Research, Kansas City, MO, USA"],"affiliations":[{"raw_affiliation_string":"Stowers Institute for Medical Research, Kansas City, MO, USA","institution_ids":["https://openalex.org/I114131015"]},{"raw_affiliation_string":"1Research Institute of Molecular Pathology (IMP), 2Institute of Molecular Biotechnology (IMBA), Vienna, Austria and 3Stowers Institute for Medical Research, Kansas City, MO, USA","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052020232","display_name":"Alexander Stark","orcid":"https://orcid.org/0000-0003-2611-0841"},"institutions":[{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Alexander Stark","raw_affiliation_strings":["Research Institute of Molecular Pathology (IMP),","1Research Institute of Molecular Pathology (IMP), 2Institute of Molecular Biotechnology (IMBA), Vienna, Austria and 3Stowers Institute for Medical Research, Kansas City, MO, USA"],"affiliations":[{"raw_affiliation_string":"Research Institute of Molecular Pathology (IMP),","institution_ids":["https://openalex.org/I195525897"]},{"raw_affiliation_string":"1Research Institute of Molecular Pathology (IMP), 2Institute of Molecular Biotechnology (IMBA), Vienna, Austria and 3Stowers Institute for Medical Research, Kansas City, MO, USA","institution_ids":["https://openalex.org/I195525897"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5058679755"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.1392,"has_fulltext":true,"cited_by_count":69,"citation_normalized_percentile":{"value":0.92222907,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"29","issue":"21","first_page":"2705","last_page":"2713"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin-immunoprecipitation","display_name":"Chromatin immunoprecipitation","score":0.7186917662620544},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.6500486135482788},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6401684880256653},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5923513770103455},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.5094042420387268},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.49878597259521484},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.4611096680164337},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44723984599113464},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44579434394836426},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32984185218811035},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2763057351112366},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15362849831581116},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.11596223711967468},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10383594036102295},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.09697389602661133}],"concepts":[{"id":"https://openalex.org/C134320426","wikidata":"https://www.wikidata.org/wiki/Q901026","display_name":"Chromatin immunoprecipitation","level":5,"score":0.7186917662620544},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.6500486135482788},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6401684880256653},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5923513770103455},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.5094042420387268},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.49878597259521484},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.4611096680164337},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44723984599113464},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44579434394836426},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32984185218811035},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2763057351112366},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15362849831581116},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.11596223711967468},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10383594036102295},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.09697389602661133}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051879","descriptor_name":"Twist-Related Protein 1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051879","descriptor_name":"Twist-Related Protein 1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051879","descriptor_name":"Twist-Related Protein 1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051879","descriptor_name":"Twist-Related Protein 1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt470","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt470","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/21/2705/50745980/bioinformatics_29_21_2705.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23980024","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23980024","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3799470","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3799470","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt470","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt470","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/21/2705/50745980/bioinformatics_29_21_2705.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.6100000143051147}],"awards":[{"id":"https://openalex.org/G3120014458","display_name":null,"funder_award_id":"Z_153_B09","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G350567466","display_name":null,"funder_award_id":"1DP2 OD004561-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132215769.pdf","grobid_xml":"https://content.openalex.org/works/W2132215769.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1963911710","https://openalex.org/W1967656072","https://openalex.org/W1968475238","https://openalex.org/W1977547738","https://openalex.org/W1987301268","https://openalex.org/W1989373989","https://openalex.org/W1989419347","https://openalex.org/W1991770658","https://openalex.org/W2019005509","https://openalex.org/W2019136439","https://openalex.org/W2026882865","https://openalex.org/W2037589637","https://openalex.org/W2039176012","https://openalex.org/W2042358820","https://openalex.org/W2044164623","https://openalex.org/W2044937161","https://openalex.org/W2046374070","https://openalex.org/W2050151193","https://openalex.org/W2050515300","https://openalex.org/W2059699217","https://openalex.org/W2060064237","https://openalex.org/W2067899297","https://openalex.org/W2079501676","https://openalex.org/W2084191969","https://openalex.org/W2084620487","https://openalex.org/W2095005830","https://openalex.org/W2097220641","https://openalex.org/W2099476141","https://openalex.org/W2102904139","https://openalex.org/W2104865962","https://openalex.org/W2109897790","https://openalex.org/W2117549173","https://openalex.org/W2118581428","https://openalex.org/W2118628540","https://openalex.org/W2129795133","https://openalex.org/W2131510173","https://openalex.org/W2145084130","https://openalex.org/W2146303939","https://openalex.org/W2150904790","https://openalex.org/W2158734721","https://openalex.org/W2164240145","https://openalex.org/W2171808845","https://openalex.org/W2247766769","https://openalex.org/W4248318091"],"related_works":["https://openalex.org/W2036927633","https://openalex.org/W2152664145","https://openalex.org/W2153561273","https://openalex.org/W2079197459","https://openalex.org/W2165899269","https://openalex.org/W2236968607","https://openalex.org/W2090848290","https://openalex.org/W2146393977","https://openalex.org/W2617836174","https://openalex.org/W2122429294"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
