{"id":"https://openalex.org/W2128623602","doi":"https://doi.org/10.1093/bioinformatics/btt466","title":"Badger\u2014an accessible genome exploration environment","display_name":"Badger\u2014an accessible genome exploration environment","publication_year":2013,"publication_date":"2013-08-11","ids":{"openalex":"https://openalex.org/W2128623602","doi":"https://doi.org/10.1093/bioinformatics/btt466","mag":"2128623602","pmid":"https://pubmed.ncbi.nlm.nih.gov/23940251"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt466","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt466","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/21/2788/6139440/btt466.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/21/2788/6139440/btt466.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082222221","display_name":"Benjamin Elsworth","orcid":"https://orcid.org/0000-0001-7328-4233"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Ben Elsworth","raw_affiliation_strings":["Institute of Evolutionary Biology, University of Edinburgh, West Mains Road, Edinburgh EH9 3JT, UK","#Institute of Evolutionary Biology, University of Edinburgh, West Mains Road, Edinburgh, EH9 3JT UK"],"affiliations":[{"raw_affiliation_string":"Institute of Evolutionary Biology, University of Edinburgh, West Mains Road, Edinburgh EH9 3JT, UK","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"#Institute of Evolutionary Biology, University of Edinburgh, West Mains Road, Edinburgh, EH9 3JT UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046040003","display_name":"Martin O. Jones","orcid":null},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martin Jones","raw_affiliation_strings":["Institute of Evolutionary Biology, University of Edinburgh, West Mains Road, Edinburgh EH9 3JT, UK","#Institute of Evolutionary Biology, University of Edinburgh, West Mains Road, Edinburgh, EH9 3JT UK"],"affiliations":[{"raw_affiliation_string":"Institute of Evolutionary Biology, University of Edinburgh, West Mains Road, Edinburgh EH9 3JT, UK","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"#Institute of Evolutionary Biology, University of Edinburgh, West Mains Road, Edinburgh, EH9 3JT UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060637041","display_name":"Mark Blaxter","orcid":"https://orcid.org/0000-0003-2861-949X"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Blaxter","raw_affiliation_strings":["#Institute of Evolutionary Biology, University of Edinburgh, West Mains Road, Edinburgh, EH9 3JT UK"],"affiliations":[{"raw_affiliation_string":"#Institute of Evolutionary Biology, University of Edinburgh, West Mains Road, Edinburgh, EH9 3JT UK","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5082222221"],"corresponding_institution_ids":["https://openalex.org/I98677209"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.5979,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.69578527,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"29","issue":"21","first_page":"2788","last_page":"2789"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12134","display_name":"Insect symbiosis and bacterial influences","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/badger","display_name":"Badger","score":0.9518694877624512},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5339205265045166},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42880979180336},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41933491826057434},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40299564599990845},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33261626958847046},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.22627249360084534},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22406092286109924},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05626341700553894}],"concepts":[{"id":"https://openalex.org/C2777146433","wikidata":"https://www.wikidata.org/wiki/Q638105","display_name":"Badger","level":2,"score":0.9518694877624512},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5339205265045166},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42880979180336},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41933491826057434},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40299564599990845},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33261626958847046},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.22627249360084534},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22406092286109924},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05626341700553894}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btt466","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt466","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/21/2788/6139440/btt466.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23940251","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23940251","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.ed.ac.uk:openaire/9c5b35ef-a085-4bbc-ae8a-26841c960e70","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/9c5b35ef-a085-4bbc-ae8a-26841c960e70","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Elsworth, B, Jones, M & Blaxter, M 2013, 'Badger-an accessible genome exploration environment', Bioinformatics, vol. 29, no. 21, pp. 2788-9. https://doi.org/10.1093/bioinformatics/btt466","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:research-information.bris.ac.uk:openaire_cris_publications/77a5939a-fb46-4eec-85ac-3a4308ab1003","is_oa":false,"landing_page_url":"https://research-information.bris.ac.uk/en/publications/77a5939a-fb46-4eec-85ac-3a4308ab1003","pdf_url":null,"source":{"id":"https://openalex.org/S4306400895","display_name":"Bristol Research (University of Bristol)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I36234482","host_organization_name":"University of Bristol","host_organization_lineage":["https://openalex.org/I36234482"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Elsworth, B, Jones, M & Blaxter, M 2013, 'Badger--an accessible genome exploration environment', Bioinformatics, vol. 29, no. 21, pp. 2788-9. https://doi.org/10.1093/bioinformatics/btt466","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:2791311","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3799468","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:publications/9c5b35ef-a085-4bbc-ae8a-26841c960e70","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/portal/en/publications/badgeran-accessible-genome-exploration-environment(9c5b35ef-a085-4bbc-ae8a-26841c960e70).html","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt466","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt466","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/21/2788/6139440/btt466.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2714170273","display_name":null,"funder_award_id":"BB/I023585/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3508426160","display_name":null,"funder_award_id":"NE/J011355/1","funder_id":"https://openalex.org/F4320320022","funder_display_name":"Sight Research UK"},{"id":"https://openalex.org/G5364756690","display_name":null,"funder_award_id":"NE/J011355/1","funder_id":"https://openalex.org/F4320334631","funder_display_name":"Natural Environment Research Council"},{"id":"https://openalex.org/G8420442382","display_name":null,"funder_award_id":"BB/K020161/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320022","display_name":"Sight Research UK","ror":"https://ror.org/03z2py885"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320334631","display_name":"Natural Environment Research Council","ror":"https://ror.org/02b5d8509"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128623602.pdf","grobid_xml":"https://content.openalex.org/works/W2128623602.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1519266993","https://openalex.org/W1967204795","https://openalex.org/W2008856488","https://openalex.org/W2047817180","https://openalex.org/W2091448229","https://openalex.org/W2132247062","https://openalex.org/W2142678478","https://openalex.org/W2145477956","https://openalex.org/W2151397621","https://openalex.org/W4210290733"],"related_works":["https://openalex.org/W2112305438","https://openalex.org/W2959721070","https://openalex.org/W1998661317","https://openalex.org/W2081097368","https://openalex.org/W2121265471","https://openalex.org/W4315571368","https://openalex.org/W2088579357","https://openalex.org/W2793703921","https://openalex.org/W2040927977","https://openalex.org/W2142023952"],"abstract_inverted_index":{"mark.blaxter@ed.ac.uk.":[0]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}