{"id":"https://openalex.org/W2138842363","doi":"https://doi.org/10.1093/bioinformatics/btt462","title":"Multiple alignment-free sequence comparison","display_name":"Multiple alignment-free sequence comparison","publication_year":2013,"publication_date":"2013-08-29","ids":{"openalex":"https://openalex.org/W2138842363","doi":"https://doi.org/10.1093/bioinformatics/btt462","mag":"2138842363","pmid":"https://pubmed.ncbi.nlm.nih.gov/23990418"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt462","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt462","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3799466","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100720540","display_name":"Jie Ren","orcid":"https://orcid.org/0000-0003-0464-9096"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jie Ren","raw_affiliation_strings":["School of Mathematics, Peking University, Beijing 100871, PR China, Molecular and Computational Biology, University of Southern California, Los Angeles, CA 90089-2910, USA, MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST/Department of Automation, Tsinghua University, Beijing 100084, PR China and Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","University of Southern California, Los Angeles, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, Peking University, Beijing 100871, PR China, Molecular and Computational Biology, University of Southern California, Los Angeles, CA 90089-2910, USA, MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST/Department of Automation, Tsinghua University, Beijing 100084, PR China and Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"University of Southern California, Los Angeles, United States","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089528237","display_name":"Kai Song","orcid":"https://orcid.org/0000-0001-6792-7159"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kai Song","raw_affiliation_strings":["University of Southern California, Los Angeles, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southern California, Los Angeles, United States","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022255550","display_name":"Fengzhu Sun","orcid":"https://orcid.org/0000-0002-8552-043X"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fengzhu Sun","raw_affiliation_strings":["University of Southern California, Los Angeles, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southern California, Los Angeles, United States","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101690048","display_name":"Minghua Deng","orcid":"https://orcid.org/0000-0002-2411-9650"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Minghua Deng","raw_affiliation_strings":["University of Southern California, Los Angeles, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southern California, Los Angeles, United States","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049954115","display_name":"Gesine Reinert","orcid":"https://orcid.org/0000-0002-0363-9470"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gesine Reinert","raw_affiliation_strings":["University of Southern California, Los Angeles, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southern California, Los Angeles, United States","institution_ids":["https://openalex.org/I1174212"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.885,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.74496426,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"29","issue":"21","first_page":"2690","last_page":"2698"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.6392999887466431,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.6392999887466431,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.06019999831914902,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.041999999433755875,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7530891299247742},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.6376971006393433},{"id":"https://openalex.org/keywords/summary-statistics","display_name":"Summary statistics","score":0.5187990069389343},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.509973406791687},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.44413647055625916},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4178684949874878},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3395317792892456},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.31938546895980835},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21618598699569702}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7530891299247742},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.6376971006393433},{"id":"https://openalex.org/C32792767","wikidata":"https://www.wikidata.org/wiki/Q1370484","display_name":"Summary statistics","level":2,"score":0.5187990069389343},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.509973406791687},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.44413647055625916},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4178684949874878},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3395317792892456},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.31938546895980835},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21618598699569702},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btt462","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt462","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23990418","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23990418","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ora.ox.ac.uk:uuid:bc04f97d-817e-43ba-bdd3-7566a6e0c363","is_oa":false,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:bc04f97d-817e-43ba-bdd3-7566a6e0c363","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PubMed (http://www.ncbi.nlm.nih.gov/pubmed/)","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3799466","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3799466","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:3799466","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3799466","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3047933566","display_name":null,"funder_award_id":"R21 HG006199","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4312827993","display_name":"ATD: Computational Analysis of Metagenomic Sequencing Data","funder_award_id":"1043075","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4895756154","display_name":"Dimensions: Pattern and Process in Marine Bacterial, Archaeal, and Protistan Biodiversity, and Effects of Human Impacts","funder_award_id":"1136818","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G794249225","display_name":null,"funder_award_id":"11021463","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8237217897","display_name":null,"funder_award_id":"OCE 1136818","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8256406756","display_name":null,"funder_award_id":"R21HG006199","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G8328088611","display_name":"Network Comparison","funder_award_id":"EP/K032402/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G851128662","display_name":null,"funder_award_id":"31171262","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8699084357","display_name":null,"funder_award_id":"EP/K032402/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W614012683","https://openalex.org/W1968363797","https://openalex.org/W1986908504","https://openalex.org/W1987591432","https://openalex.org/W1988827980","https://openalex.org/W1991485331","https://openalex.org/W2008179033","https://openalex.org/W2008867180","https://openalex.org/W2016591195","https://openalex.org/W2039027507","https://openalex.org/W2057215967","https://openalex.org/W2074231493","https://openalex.org/W2085315537","https://openalex.org/W2087064593","https://openalex.org/W2088775137","https://openalex.org/W2096116532","https://openalex.org/W2119488386","https://openalex.org/W2145126338","https://openalex.org/W2147166867","https://openalex.org/W2155430004","https://openalex.org/W2166162901","https://openalex.org/W3102943268","https://openalex.org/W4248209847"],"related_works":["https://openalex.org/W2487162673","https://openalex.org/W2793211469","https://openalex.org/W2949152769","https://openalex.org/W4372354731","https://openalex.org/W2807634898","https://openalex.org/W1692008701","https://openalex.org/W2942366970","https://openalex.org/W2597588799","https://openalex.org/W4360593462","https://openalex.org/W2562400057"],"abstract_inverted_index":{"MOTIVATION:":[0],"Recently,":[1],"a":[2,87,99,142],"range":[3],"of":[4,14,31,38,46,51,56,67,69,89,101,138,179],"new":[5],"statistics":[6,26,39,47,140,150,162,182],"have":[7],"become":[8],"available":[9,184,200],"for":[10,48,134],"the":[11,28,52,58,96,117,148,169,172,180],"alignment-free":[12,161],"comparison":[13,30,50,71],"two":[15,34,74],"sequences":[16,82],"based":[17],"on":[18,145],"k-tuple":[19,54],"word":[20],"content.":[21],"Here,":[22],"we":[23,76],"extend":[24],"these":[25],"to":[27,80,86,94,120,166],"simultaneous":[29],"more":[32,164],"than":[33,171],"sequences.":[35,102],"Our":[36,104,177],"suite":[37],"contains,":[40],"first,":[41,79],"C(*)1":[42],"and":[43,60,64],"C(S)1,":[44],"extensions":[45],"pairwise":[49,70,173],"joint":[53],"content":[55],"all":[57,137],"sequences,":[59,91],"second,":[61,93],"C(*)2,":[62],"C(S)2":[63],"C(geo)2,":[65],"averages":[66],"sums":[68],"statistics.":[72,158,175],"The":[73,159],"tasks":[75],"consider":[77],"are,":[78],"identify":[81,121],"that":[83,132],"are":[84,151,163,199],"similar":[85,125,143],"set":[88,100],"target":[90],"and,":[92],"measure":[95],"similarity":[97],"within":[98],"RESULTS:":[103],"investigation":[105],"uses":[106],"both":[107],"simulated":[108,146],"data":[109,115,147,170,198],"as":[110,112,185],"well":[111],"cis-regulatory":[113,122],"module":[114],"where":[116],"task":[118],"is":[119,183],"modules":[123],"with":[124],"transcription":[126],"factor":[127],"binding":[128],"sites.":[129],"We":[130],"find":[131],"although":[133],"real":[135],"data,":[136],"our":[139],"show":[141],"performance,":[144],"Shepp-type":[149],"in":[152,168],"some":[153],"instances":[154],"outperformed":[155],"by":[156],"star-type":[157],"multiple":[160],"sensitive":[165],"contamination":[167],"average":[174],"AVAILABILITY:":[176],"implementation":[178],"five":[181],"R":[186],"package":[187],"named":[188],"'multiAlignFree'":[189],"at":[190,201],"be":[191],"http://www-rcf.usc.edu/\u223cfsun/Programs/multiAlignFree/multiAlignFreemain.html.":[192],"CONTACT:":[193],"reinert@stats.ox.ac.uk.":[194],"SUPPLEMENTARY":[195],"INFORMATION:":[196],"Supplementary":[197],"Bioinformatics":[202],"online.":[203]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
