{"id":"https://openalex.org/W2128272450","doi":"https://doi.org/10.1093/bioinformatics/btt404","title":"Modeling nucleosome position distributions from experimental nucleosome positioning maps","display_name":"Modeling nucleosome position distributions from experimental nucleosome positioning maps","publication_year":2013,"publication_date":"2013-07-11","ids":{"openalex":"https://openalex.org/W2128272450","doi":"https://doi.org/10.1093/bioinformatics/btt404","mag":"2128272450","pmid":"https://pubmed.ncbi.nlm.nih.gov/23846748"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt404","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt404","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034123513","display_name":"Robert Sch\u00f6pflin","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210148663","display_name":"University of Applied Sciences Stralsund","ror":"https://ror.org/04g99jx54","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210148663"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Robert Sch\u00f6pflin","raw_affiliation_strings":["1 Institute for Applied Computer Science, University of Applied Sciences Stralsund, Zur Schwedenschanze 15, Stralsund 18435, Germany and 2Deutsches Krebsforschungszentrum (DKFZ) & BioQuant, Im Neuenheimer Feld 280, Heidelberg 69120, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute for Applied Computer Science, University of Applied Sciences Stralsund, Zur Schwedenschanze 15, Stralsund 18435, Germany and 2Deutsches Krebsforschungszentrum (DKFZ) & BioQuant, Im Neuenheimer Feld 280, Heidelberg 69120, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210148663"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048504577","display_name":"Vladimir B. Teif","orcid":"https://orcid.org/0000-0002-5931-7534"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210148663","display_name":"University of Applied Sciences Stralsund","ror":"https://ror.org/04g99jx54","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210148663"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Vladimir B. Teif","raw_affiliation_strings":["1 Institute for Applied Computer Science, University of Applied Sciences Stralsund, Zur Schwedenschanze 15, Stralsund 18435, Germany and 2Deutsches Krebsforschungszentrum (DKFZ) & BioQuant, Im Neuenheimer Feld 280, Heidelberg 69120, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute for Applied Computer Science, University of Applied Sciences Stralsund, Zur Schwedenschanze 15, Stralsund 18435, Germany and 2Deutsches Krebsforschungszentrum (DKFZ) & BioQuant, Im Neuenheimer Feld 280, Heidelberg 69120, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210148663"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070548943","display_name":"Oliver J. M\u00fcller","orcid":"https://orcid.org/0000-0001-8223-2638"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210148663","display_name":"University of Applied Sciences Stralsund","ror":"https://ror.org/04g99jx54","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210148663"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver M\u00fcller","raw_affiliation_strings":["1 Institute for Applied Computer Science, University of Applied Sciences Stralsund, Zur Schwedenschanze 15, Stralsund 18435, Germany and 2Deutsches Krebsforschungszentrum (DKFZ) & BioQuant, Im Neuenheimer Feld 280, Heidelberg 69120, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute for Applied Computer Science, University of Applied Sciences Stralsund, Zur Schwedenschanze 15, Stralsund 18435, Germany and 2Deutsches Krebsforschungszentrum (DKFZ) & BioQuant, Im Neuenheimer Feld 280, Heidelberg 69120, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210148663"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090368187","display_name":"Christin Weinberg","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210148663","display_name":"University of Applied Sciences Stralsund","ror":"https://ror.org/04g99jx54","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210148663"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christin Weinberg","raw_affiliation_strings":["1 Institute for Applied Computer Science, University of Applied Sciences Stralsund, Zur Schwedenschanze 15, Stralsund 18435, Germany and 2Deutsches Krebsforschungszentrum (DKFZ) & BioQuant, Im Neuenheimer Feld 280, Heidelberg 69120, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute for Applied Computer Science, University of Applied Sciences Stralsund, Zur Schwedenschanze 15, Stralsund 18435, Germany and 2Deutsches Krebsforschungszentrum (DKFZ) & BioQuant, Im Neuenheimer Feld 280, Heidelberg 69120, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210148663"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063410783","display_name":"Karsten Rippe","orcid":"https://orcid.org/0000-0001-9951-9395"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210148663","display_name":"University of Applied Sciences Stralsund","ror":"https://ror.org/04g99jx54","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210148663"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Karsten Rippe","raw_affiliation_strings":["1 Institute for Applied Computer Science, University of Applied Sciences Stralsund, Zur Schwedenschanze 15, Stralsund 18435, Germany and 2Deutsches Krebsforschungszentrum (DKFZ) & BioQuant, Im Neuenheimer Feld 280, Heidelberg 69120, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute for Applied Computer Science, University of Applied Sciences Stralsund, Zur Schwedenschanze 15, Stralsund 18435, Germany and 2Deutsches Krebsforschungszentrum (DKFZ) & BioQuant, Im Neuenheimer Feld 280, Heidelberg 69120, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210148663"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016153344","display_name":"Gero Wedemann","orcid":"https://orcid.org/0000-0001-7869-774X"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210148663","display_name":"University of Applied Sciences Stralsund","ror":"https://ror.org/04g99jx54","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210148663"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gero Wedemann","raw_affiliation_strings":["1 Institute for Applied Computer Science, University of Applied Sciences Stralsund, Zur Schwedenschanze 15, Stralsund 18435, Germany and 2Deutsches Krebsforschungszentrum (DKFZ) & BioQuant, Im Neuenheimer Feld 280, Heidelberg 69120, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute for Applied Computer Science, University of Applied Sciences Stralsund, Zur Schwedenschanze 15, Stralsund 18435, Germany and 2Deutsches Krebsforschungszentrum (DKFZ) & BioQuant, Im Neuenheimer Feld 280, Heidelberg 69120, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210148663"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.614,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.90335265,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"29","issue":"19","first_page":"2380","last_page":"2386"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10268","display_name":"Developmental Biology and Gene Regulation","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleosome","display_name":"Nucleosome","score":0.9277123212814331},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6247798800468445},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.43026071786880493},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42963898181915283},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4185214638710022},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.41142168641090393},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3750995993614197},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.34346625208854675},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2749348282814026},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26724010705947876},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.24182164669036865},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.1857931911945343}],"concepts":[{"id":"https://openalex.org/C84772758","wikidata":"https://www.wikidata.org/wiki/Q271794","display_name":"Nucleosome","level":4,"score":0.9277123212814331},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6247798800468445},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.43026071786880493},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42963898181915283},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4185214638710022},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.41142168641090393},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3750995993614197},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.34346625208854675},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2749348282814026},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26724010705947876},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.24182164669036865},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.1857931911945343},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt404","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt404","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23846748","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23846748","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1529808767","https://openalex.org/W1967163877","https://openalex.org/W1969026780","https://openalex.org/W1973193325","https://openalex.org/W1983853806","https://openalex.org/W1988294855","https://openalex.org/W1989373989","https://openalex.org/W2005282195","https://openalex.org/W2013340257","https://openalex.org/W2014002637","https://openalex.org/W2061690230","https://openalex.org/W2073374533","https://openalex.org/W2075665712","https://openalex.org/W2086038224","https://openalex.org/W2095595785","https://openalex.org/W2099888659","https://openalex.org/W2111607063","https://openalex.org/W2112582023","https://openalex.org/W2114752404","https://openalex.org/W2115219137","https://openalex.org/W2128016314","https://openalex.org/W2131192238","https://openalex.org/W2131503424","https://openalex.org/W2133015139","https://openalex.org/W2136144150","https://openalex.org/W2142195360","https://openalex.org/W2142808828","https://openalex.org/W2159479483","https://openalex.org/W2171432823","https://openalex.org/W2171605297","https://openalex.org/W3023628220","https://openalex.org/W6666108530"],"related_works":["https://openalex.org/W2113512405","https://openalex.org/W3124098632","https://openalex.org/W1525192260","https://openalex.org/W2082123987","https://openalex.org/W1994506687","https://openalex.org/W2151373518","https://openalex.org/W3034809213","https://openalex.org/W2348141163","https://openalex.org/W2094588941","https://openalex.org/W2076950513"],"abstract_inverted_index":{"MOTIVATION:":[0],"Recent":[1],"experimental":[2,119],"advancements":[3],"allow":[4],"determining":[5],"positions":[6],"of":[7,20,29,41,51,61,70,154,158],"nucleosomes":[8,52],"for":[9,83,113,152],"complete":[10],"genomes.":[11],"However,":[12],"the":[13,49,54,59,74,114,123,155,159],"resulting":[14],"nucleosome":[15,62,86,108,127,143,160],"occupancy":[16],"maps":[17],"are":[18,174],"averages":[19],"heterogeneous":[21],"cell":[22,137],"populations.":[23],"Accordingly,":[24],"they":[25],"represent":[26],"a":[27,30,34,81,93,98,170],"snapshot":[28],"dynamic":[31],"ensemble":[32],"at":[33,129,145,177],"single":[35],"time":[36],"point":[37],"with":[38,97],"an":[39],"overlay":[40],"many":[42],"configurations":[43,87,109,151],"from":[44,73,118],"different":[45,135],"cells.":[46],"To":[47],"study":[48],"organization":[50],"along":[53],"genome":[55],"and":[56,92,110,149,169],"to":[57,67,125],"understand":[58],"mechanisms":[60],"translocation,":[63],"it":[64],"is":[65],"necessary":[66],"retrieve":[68],"features":[69],"specific":[71,107],"conformations":[72],"population":[75],"average.":[76],"RESULTS:":[77],"Here,":[78],"we":[79,105],"present":[80],"method":[82,124,140],"identifying":[84],"non-overlapping":[85],"that":[88],"combines":[89],"binary-variable":[90],"analysis":[91],"Monte":[94],"Carlo":[95],"approach":[96],"simulated":[99],"annealing":[100],"scheme.":[101],"In":[102],"this":[103],"manner,":[104],"obtain":[106],"optimized":[111],"solutions":[112],"complex":[115],"positioning":[116,128],"patterns":[117],"data.":[120],"We":[121],"apply":[122],"compare":[126],"transcription":[130],"factor":[131],"binding":[132],"sites":[133],"in":[134],"mouse":[136],"types.":[138],"Our":[139],"can":[141],"model":[142],"translocations":[144],"regulatory":[146],"genomic":[147],"elements":[148],"generate":[150],"simulations":[153],"spatial":[156],"folding":[157],"chain.":[161],"AVAILABILITY:":[162],"Source":[163],"code,":[164],"precompiled":[165],"binaries,":[166],"test":[167,172],"data":[168],"web-based":[171],"installation":[173],"freely":[175],"available":[176],"http://bioinformatics.fh-stralsund.de/nucpos/":[178]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
