{"id":"https://openalex.org/W2132580736","doi":"https://doi.org/10.1093/bioinformatics/btt369","title":"Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server","display_name":"Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server","publication_year":2013,"publication_date":"2013-06-26","ids":{"openalex":"https://openalex.org/W2132580736","doi":"https://doi.org/10.1093/bioinformatics/btt369","mag":"2132580736","pmid":"https://pubmed.ncbi.nlm.nih.gov/23803466"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt369","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt369","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/18/2285/17127184/btt369.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/18/2285/17127184/btt369.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028516477","display_name":"Pier Paolo Olimpieri","orcid":"https://orcid.org/0000-0001-7934-9034"},"institutions":[{"id":"https://openalex.org/I4210153523","display_name":"Istituto Pasteur","ror":"https://ror.org/051v7w268","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210153523"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Pier Paolo Olimpieri","raw_affiliation_strings":["1 Department of Physics, Sapienza University and 2Istituto Pasteur \u2013 Fondazione Cenci Bolognetti, 00185 Rome, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Physics, Sapienza University and 2Istituto Pasteur \u2013 Fondazione Cenci Bolognetti, 00185 Rome, Italy","institution_ids":["https://openalex.org/I4210153523"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044974282","display_name":"Anna Chailyan","orcid":"https://orcid.org/0000-0002-1661-3288"},"institutions":[{"id":"https://openalex.org/I4210153523","display_name":"Istituto Pasteur","ror":"https://ror.org/051v7w268","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210153523"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Anna Chailyan","raw_affiliation_strings":["1 Department of Physics, Sapienza University and 2Istituto Pasteur \u2013 Fondazione Cenci Bolognetti, 00185 Rome, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Physics, Sapienza University and 2Istituto Pasteur \u2013 Fondazione Cenci Bolognetti, 00185 Rome, Italy","institution_ids":["https://openalex.org/I4210153523"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112661316","display_name":"Anna Tramontano","orcid":null},"institutions":[{"id":"https://openalex.org/I4210153523","display_name":"Istituto Pasteur","ror":"https://ror.org/051v7w268","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210153523"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Anna Tramontano","raw_affiliation_strings":["1 Department of Physics, Sapienza University and 2Istituto Pasteur \u2013 Fondazione Cenci Bolognetti, 00185 Rome, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Physics, Sapienza University and 2Istituto Pasteur \u2013 Fondazione Cenci Bolognetti, 00185 Rome, Italy","institution_ids":["https://openalex.org/I4210153523"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043947069","display_name":"Paolo Marcatili","orcid":"https://orcid.org/0000-0003-2615-5695"},"institutions":[{"id":"https://openalex.org/I4210153523","display_name":"Istituto Pasteur","ror":"https://ror.org/051v7w268","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210153523"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Marcatili","raw_affiliation_strings":["1 Department of Physics, Sapienza University and 2Istituto Pasteur \u2013 Fondazione Cenci Bolognetti, 00185 Rome, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Physics, Sapienza University and 2Istituto Pasteur \u2013 Fondazione Cenci Bolognetti, 00185 Rome, Italy","institution_ids":["https://openalex.org/I4210153523"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5028516477"],"corresponding_institution_ids":["https://openalex.org/I4210153523"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.4583,"has_fulltext":true,"cited_by_count":98,"citation_normalized_percentile":{"value":0.92114441,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"29","issue":"18","first_page":"2285","last_page":"2291"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.6467868685722351},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6170588731765747},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6157069802284241},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.561885416507721},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.5196029543876648},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4527377188205719},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2820260524749756},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.2059398591518402},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15910738706588745},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12674623727798462}],"concepts":[{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.6467868685722351},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6170588731765747},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6157069802284241},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.561885416507721},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.5196029543876648},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4527377188205719},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2820260524749756},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.2059398591518402},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15910738706588745},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12674623727798462}],"mesh":[{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btt369","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt369","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/18/2285/17127184/btt369.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23803466","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23803466","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2745038","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3753563","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:iris.uniroma1.it:11573/541336","is_oa":false,"landing_page_url":"http://hdl.handle.net/11573/541336","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3753563","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3753563","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/596812","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/596812","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt369","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt369","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/18/2285/17127184/btt369.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6899999976158142,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2428236246","display_name":null,"funder_award_id":"KUK-I1-012-43","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G8999573939","display_name":null,"funder_award_id":"Award No. KUK-I1-012-43","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132580736.pdf","grobid_xml":"https://content.openalex.org/works/W2132580736.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1515357074","https://openalex.org/W1572242003","https://openalex.org/W1892185422","https://openalex.org/W1966140823","https://openalex.org/W1967965427","https://openalex.org/W1978090240","https://openalex.org/W1978499958","https://openalex.org/W1982679430","https://openalex.org/W1999866186","https://openalex.org/W2010533241","https://openalex.org/W2017765436","https://openalex.org/W2040405646","https://openalex.org/W2045266215","https://openalex.org/W2049631297","https://openalex.org/W2081912151","https://openalex.org/W2082947088","https://openalex.org/W2088510308","https://openalex.org/W2100213817","https://openalex.org/W2101636319","https://openalex.org/W2105273832","https://openalex.org/W2110036226","https://openalex.org/W2122818150","https://openalex.org/W2127552260","https://openalex.org/W2136892614","https://openalex.org/W2143467722","https://openalex.org/W2150884352","https://openalex.org/W2153153865","https://openalex.org/W2156125289","https://openalex.org/W2162561057","https://openalex.org/W2166021114","https://openalex.org/W2167795220","https://openalex.org/W2167833742","https://openalex.org/W2169242540","https://openalex.org/W2171690009","https://openalex.org/W2412883754","https://openalex.org/W2463734709","https://openalex.org/W2786247557","https://openalex.org/W2793675821","https://openalex.org/W4229892776"],"related_works":["https://openalex.org/W2378076731","https://openalex.org/W4286888643","https://openalex.org/W3210795196","https://openalex.org/W2088988140","https://openalex.org/W2803103875","https://openalex.org/W2951529875","https://openalex.org/W2391453316","https://openalex.org/W2297768894","https://openalex.org/W1988064119","https://openalex.org/W4236625958"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":6}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
