{"id":"https://openalex.org/W2158862451","doi":"https://doi.org/10.1093/bioinformatics/btt360","title":"Optimizing multiple sequence alignments using a genetic algorithm based on three objectives: structural information, non-gaps percentage and totally conserved columns","display_name":"Optimizing multiple sequence alignments using a genetic algorithm based on three objectives: structural information, non-gaps percentage and totally conserved columns","publication_year":2013,"publication_date":"2013-06-21","ids":{"openalex":"https://openalex.org/W2158862451","doi":"https://doi.org/10.1093/bioinformatics/btt360","mag":"2158862451","pmid":"https://pubmed.ncbi.nlm.nih.gov/23793754"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt360","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt360","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/17/2112/48889943/bioinformatics_29_17_2112.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/17/2112/48889943/bioinformatics_29_17_2112.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047036875","display_name":"Francisco Ortu\u00f1o","orcid":"https://orcid.org/0000-0001-7424-1753"},"institutions":[{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Francisco M. Ortu\u00f1o","raw_affiliation_strings":["1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210087039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058407177","display_name":"Olga Valenzuela","orcid":"https://orcid.org/0000-0001-6034-9392"},"institutions":[{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Olga Valenzuela","raw_affiliation_strings":["1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210087039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052775844","display_name":"Fernando Rojas","orcid":"https://orcid.org/0000-0002-4377-6744"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Fernando Rojas","raw_affiliation_strings":["1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210087039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039951150","display_name":"H. Pomares","orcid":"https://orcid.org/0000-0002-8528-828X"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Hector Pomares","raw_affiliation_strings":["1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210087039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055657693","display_name":"Javier P\u00e9rez-Florido","orcid":"https://orcid.org/0000-0002-0223-9889"},"institutions":[{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Javier P. Florido","raw_affiliation_strings":["1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210087039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068042887","display_name":"Jos\u00e9 Urquiza","orcid":"https://orcid.org/0000-0003-2220-607X"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jose M. Urquiza","raw_affiliation_strings":["1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210087039"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089029287","display_name":"Ignacio Rojas","orcid":"https://orcid.org/0000-0002-1033-5635"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ignacio Rojas","raw_affiliation_strings":["1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Architecture and Computer Technology, CITIC-UGR, 2Department of Applied Mathematics, University of Granada, 18071 Granada, Spain, 3Bioinformatics Department, Genomics and Bioinformatics Platform of Andalusia (GBPA), 41092 Seville, Spain and 4Chromatin and Disease Group, Bellvitge Biomedical Research Institute (IDIBELL), L\u2019Hospitalet, Barcelona 08907, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210087039"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5047036875"],"corresponding_institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210087039"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.1932,"has_fulltext":true,"cited_by_count":58,"citation_normalized_percentile":{"value":0.88052001,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"29","issue":"17","first_page":"2112","last_page":"2121"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.6871016621589661},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.6290120482444763},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.6103650331497192},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.5689652562141418},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5682553052902222},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5676442980766296},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.5537258982658386},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5439034700393677},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5326582789421082},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5258370637893677},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35859212279319763},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2602154016494751},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20568668842315674},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17553886771202087}],"concepts":[{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.6871016621589661},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.6290120482444763},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.6103650331497192},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.5689652562141418},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5682553052902222},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5676442980766296},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.5537258982658386},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5439034700393677},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5326582789421082},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5258370637893677},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35859212279319763},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2602154016494751},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20568668842315674},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17553886771202087},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt360","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt360","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/17/2112/48889943/bioinformatics_29_17_2112.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23793754","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23793754","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digibug.ugr.es:10481/100937","is_oa":false,"landing_page_url":"https://hdl.handle.net/10481/100937","pdf_url":null,"source":{"id":"https://openalex.org/S4306400567","display_name":"Institutional Repository of the University of Granada (University of Granada)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173304897","host_organization_name":"Universidad de Granada","host_organization_lineage":["https://openalex.org/I173304897"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"AM"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt360","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt360","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/17/2112/48889943/bioinformatics_29_17_2112.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158862451.pdf","grobid_xml":"https://content.openalex.org/works/W2158862451.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W11515763","https://openalex.org/W103650626","https://openalex.org/W1512383952","https://openalex.org/W1527979595","https://openalex.org/W1542067597","https://openalex.org/W1590240800","https://openalex.org/W1775447850","https://openalex.org/W1967627390","https://openalex.org/W1969153299","https://openalex.org/W1978014862","https://openalex.org/W1979081881","https://openalex.org/W1980913156","https://openalex.org/W1996681309","https://openalex.org/W2005313213","https://openalex.org/W2007668764","https://openalex.org/W2009310436","https://openalex.org/W2011289056","https://openalex.org/W2016339621","https://openalex.org/W2028624874","https://openalex.org/W2041282815","https://openalex.org/W2052831012","https://openalex.org/W2053238889","https://openalex.org/W2059932290","https://openalex.org/W2074703985","https://openalex.org/W2076259340","https://openalex.org/W2088156508","https://openalex.org/W2093931624","https://openalex.org/W2101418959","https://openalex.org/W2102941368","https://openalex.org/W2106882534","https://openalex.org/W2118028531","https://openalex.org/W2122097054","https://openalex.org/W2122369731","https://openalex.org/W2126105956","https://openalex.org/W2127122014","https://openalex.org/W2127688908","https://openalex.org/W2127774996","https://openalex.org/W2128442209","https://openalex.org/W2128935141","https://openalex.org/W2130479394","https://openalex.org/W2132926880","https://openalex.org/W2136570298","https://openalex.org/W2140872496","https://openalex.org/W2141885858","https://openalex.org/W2143210482","https://openalex.org/W2144362290","https://openalex.org/W2146058063","https://openalex.org/W2147436445","https://openalex.org/W2151509690","https://openalex.org/W2152688507","https://openalex.org/W2157451851","https://openalex.org/W2158714788","https://openalex.org/W2159638180","https://openalex.org/W2162337906","https://openalex.org/W2169602699","https://openalex.org/W2600349519","https://openalex.org/W2601913882","https://openalex.org/W2606395562","https://openalex.org/W3150945973","https://openalex.org/W3150974748","https://openalex.org/W4238424869","https://openalex.org/W4252684946","https://openalex.org/W4302367531","https://openalex.org/W4320301318","https://openalex.org/W6600477597","https://openalex.org/W6632556893","https://openalex.org/W6678068712","https://openalex.org/W6679084438"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2141411672","https://openalex.org/W2111937814","https://openalex.org/W2730968108","https://openalex.org/W2759306076","https://openalex.org/W187239587","https://openalex.org/W1482324242","https://openalex.org/W4386770652","https://openalex.org/W2158700816","https://openalex.org/W2122131968"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"is":[3],"available":[4],"at":[5],"http://www.ugr.es/~fortuno/MOSAStrE/MO-SAStrE.zip.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":5}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
