{"id":"https://openalex.org/W2124129296","doi":"https://doi.org/10.1093/bioinformatics/btt358","title":"SbacHTS: Spatial background noise correction for High-Throughput RNAi Screening","display_name":"SbacHTS: Spatial background noise correction for High-Throughput RNAi Screening","publication_year":2013,"publication_date":"2013-06-28","ids":{"openalex":"https://openalex.org/W2124129296","doi":"https://doi.org/10.1093/bioinformatics/btt358","mag":"2124129296","pmid":"https://pubmed.ncbi.nlm.nih.gov/23814141"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt358","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt358","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/17/2218/48890740/bioinformatics_29_17_2218.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/17/2218/48890740/bioinformatics_29_17_2218.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054708080","display_name":"Rui Zhong","orcid":"https://orcid.org/0000-0003-4570-0927"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"education","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rui Zhong","raw_affiliation_strings":["1 Quantitative Biomedical Research Center, Department of Clinical Science, 2Harold C. Simmons Comprehensive Cancer Center and 3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA"],"affiliations":[{"raw_affiliation_string":"1 Quantitative Biomedical Research Center, Department of Clinical Science, 2Harold C. Simmons Comprehensive Cancer Center and 3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111045106","display_name":"Min Soo Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"education","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Min Soo Kim","raw_affiliation_strings":["1 Quantitative Biomedical Research Center, Department of Clinical Science, 2Harold C. Simmons Comprehensive Cancer Center and 3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA"],"affiliations":[{"raw_affiliation_string":"1 Quantitative Biomedical Research Center, Department of Clinical Science, 2Harold C. Simmons Comprehensive Cancer Center and 3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088421747","display_name":"Michael A. White","orcid":"https://orcid.org/0000-0001-6772-1388"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"education","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael A. White","raw_affiliation_strings":["1 Quantitative Biomedical Research Center, Department of Clinical Science, 2Harold C. Simmons Comprehensive Cancer Center and 3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA"],"affiliations":[{"raw_affiliation_string":"1 Quantitative Biomedical Research Center, Department of Clinical Science, 2Harold C. Simmons Comprehensive Cancer Center and 3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100661771","display_name":"Yang Xie","orcid":"https://orcid.org/0000-0001-9456-1762"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"education","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yang Xie","raw_affiliation_strings":["1 Quantitative Biomedical Research Center, Department of Clinical Science, 2Harold C. Simmons Comprehensive Cancer Center and 3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA"],"affiliations":[{"raw_affiliation_string":"1 Quantitative Biomedical Research Center, Department of Clinical Science, 2Harold C. Simmons Comprehensive Cancer Center and 3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111961091","display_name":"Guanghua Xiao","orcid":"https://orcid.org/0000-0002-6738-7014"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"education","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guanghua Xiao","raw_affiliation_strings":["1 Quantitative Biomedical Research Center, Department of Clinical Science, 2Harold C. Simmons Comprehensive Cancer Center and 3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA"],"affiliations":[{"raw_affiliation_string":"1 Quantitative Biomedical Research Center, Department of Clinical Science, 2Harold C. Simmons Comprehensive Cancer Center and 3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA","institution_ids":["https://openalex.org/I867280407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5054708080"],"corresponding_institution_ids":["https://openalex.org/I867280407"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.298,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.62775291,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"29","issue":"17","first_page":"2218","last_page":"2220"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7172759771347046},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.6690346598625183},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.6346326470375061},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5833429098129272},{"id":"https://openalex.org/keywords/interference","display_name":"Interference (communication)","score":0.49079832434654236},{"id":"https://openalex.org/keywords/rna-interference","display_name":"RNA interference","score":0.47142690420150757},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38555651903152466},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34721800684928894},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22384759783744812},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20045951008796692},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16066959500312805},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11199453473091125},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.1027701199054718},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.09651607275009155},{"id":"https://openalex.org/keywords/wireless","display_name":"Wireless","score":0.09453687071800232},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08093306422233582},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.0804237425327301}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7172759771347046},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.6690346598625183},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.6346326470375061},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5833429098129272},{"id":"https://openalex.org/C32022120","wikidata":"https://www.wikidata.org/wiki/Q797225","display_name":"Interference (communication)","level":3,"score":0.49079832434654236},{"id":"https://openalex.org/C166703698","wikidata":"https://www.wikidata.org/wiki/Q201993","display_name":"RNA interference","level":4,"score":0.47142690420150757},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38555651903152466},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34721800684928894},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22384759783744812},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20045951008796692},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16066959500312805},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11199453473091125},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.1027701199054718},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.09651607275009155},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.09453687071800232},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08093306422233582},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0804237425327301},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.0},{"id":"https://openalex.org/C127162648","wikidata":"https://www.wikidata.org/wiki/Q16858953","display_name":"Channel (broadcasting)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D034622","descriptor_name":"RNA Interference","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034622","descriptor_name":"RNA Interference","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034622","descriptor_name":"RNA Interference","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt358","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt358","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/17/2218/48890740/bioinformatics_29_17_2218.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23814141","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23814141","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3115178","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3740628","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt358","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt358","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/17/2218/48890740/bioinformatics_29_17_2218.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124129296.pdf","grobid_xml":"https://content.openalex.org/works/W2124129296.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2030597423","https://openalex.org/W2051000382","https://openalex.org/W2097449851","https://openalex.org/W2100388369","https://openalex.org/W2125121861","https://openalex.org/W2140954822","https://openalex.org/W2141064379","https://openalex.org/W2150091347","https://openalex.org/W2157866033","https://openalex.org/W2159316010","https://openalex.org/W2161645441","https://openalex.org/W4301341693"],"related_works":["https://openalex.org/W2387630553","https://openalex.org/W1572871015","https://openalex.org/W2411232599","https://openalex.org/W3156756868","https://openalex.org/W1998876971","https://openalex.org/W1976394015","https://openalex.org/W2030262874","https://openalex.org/W2885524011","https://openalex.org/W2078249988","https://openalex.org/W2138908598"],"abstract_inverted_index":{"http://www.galaxy.qbrc.org/":[0]},"counts_by_year":[{"year":2014,"cited_by_count":2}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
