{"id":"https://openalex.org/W4249430878","doi":"https://doi.org/10.1093/bioinformatics/btt337","title":"EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments","display_name":"EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments","publication_year":2013,"publication_date":"2013-07-24","ids":{"openalex":"https://openalex.org/W4249430878","doi":"https://doi.org/10.1093/bioinformatics/btt337"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt337","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt337","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2073/525476/btt337.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2073/525476/btt337.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045259437","display_name":"Ning Leng","orcid":"https://orcid.org/0000-0002-1015-5749"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ning Leng","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101914226","display_name":"John A. Dawson","orcid":"https://orcid.org/0009-0008-0905-2065"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"John A. Dawson","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110114336","display_name":"James A. Thomson","orcid":"https://orcid.org/0000-0003-2970-942X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"James A. Thomson","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041845180","display_name":"Victor Ruotti","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Victor Ruotti","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080982144","display_name":"Anna I. Rissman","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anna I. Rissman","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000250941","display_name":"Bart M. G. Smits","orcid":"https://orcid.org/0000-0003-3806-2357"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bart M. G. Smits","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112834397","display_name":"Jill D. Haag","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jill D. Haag","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102352016","display_name":"Michael N. Gould","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael N. Gould","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083447121","display_name":"Ron Stewart","orcid":"https://orcid.org/0000-0002-9041-1828"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ron M. Stewart","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5086207166","display_name":"Christina Kendziorski","orcid":"https://orcid.org/0000-0002-0700-6267"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christina Kendziorski","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":10,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.7878,"has_fulltext":false,"cited_by_count":111,"citation_normalized_percentile":{"value":0.9593089,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"29","issue":"16","first_page":"2073","last_page":"2073"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.8373000025749207,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.8373000025749207,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.7706000208854675,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bayes-theorem","display_name":"Bayes' theorem","score":0.7202366590499878},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6789425611495972},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6061745285987854},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.48072078824043274},{"id":"https://openalex.org/keywords/bayes-factor","display_name":"Bayes factor","score":0.4142049551010132},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3759286403656006},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.3550303280353546},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.3273570239543915},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32374560832977295},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21199440956115723},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1493375301361084},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08856567740440369},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.07219201326370239},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07060423493385315}],"concepts":[{"id":"https://openalex.org/C207201462","wikidata":"https://www.wikidata.org/wiki/Q182505","display_name":"Bayes' theorem","level":3,"score":0.7202366590499878},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6789425611495972},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6061745285987854},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.48072078824043274},{"id":"https://openalex.org/C142291917","wikidata":"https://www.wikidata.org/wiki/Q4165283","display_name":"Bayes factor","level":4,"score":0.4142049551010132},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3759286403656006},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.3550303280353546},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.3273570239543915},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32374560832977295},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21199440956115723},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1493375301361084},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08856567740440369},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.07219201326370239},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07060423493385315},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt337","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt337","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2073/525476/btt337.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2965354","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3888201","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt337","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt337","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2073/525476/btt337.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4249430878.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3034774545","https://openalex.org/W4390542592","https://openalex.org/W4287269571","https://openalex.org/W2083677154","https://openalex.org/W2188650561","https://openalex.org/W3137735170","https://openalex.org/W2825391699","https://openalex.org/W3104584085","https://openalex.org/W4237728685","https://openalex.org/W2089519699"],"abstract_inverted_index":{"doi:10.1093/bioinformatics/btt087":[0],"Bioinformatics":[1],"(2013)":[2],"29(8),":[3],"1035\u20131043":[4],"This":[5,20],"article":[6,25],"was":[7],"published":[8],"with":[9],"the":[10,28,31,49],"incorrect":[11],"copyright":[12],"information":[13],"and":[14,43],"should":[15],"have":[16],"appeared":[17],"as":[18],"below:":[19],"is":[21,52],"an":[22],"Open":[23],"Access":[24],"distributed":[26],"under":[27],"terms":[29],"of":[30],"Creative":[32],"Commons":[33],"Attribution":[34],"Non-Commercial":[35],"License":[36],"(http://creativecommons.org/licenses/by-nc/3.0/),":[37],"which":[38],"permits":[39],"non-commercial":[40],"re-use,":[41,57],"distribution,":[42],"reproduction":[44],"in":[45],"any":[46],"medium,":[47],"provided":[48],"original":[50],"work":[51],"properly":[53],"cited.":[54],"For":[55],"commercial":[56],"please":[58],"contact":[59],"[email":[60],"protected]":[61]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":21},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":19},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":2}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
