{"id":"https://openalex.org/W2096514143","doi":"https://doi.org/10.1093/bioinformatics/btt335","title":"Joint network and node selection for pathway-based genomic data analysis","display_name":"Joint network and node selection for pathway-based genomic data analysis","publication_year":2013,"publication_date":"2013-06-08","ids":{"openalex":"https://openalex.org/W2096514143","doi":"https://doi.org/10.1093/bioinformatics/btt335","mag":"2096514143","pmid":"https://pubmed.ncbi.nlm.nih.gov/23749986"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt335","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt335","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/1987/519420/btt335.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/1987/519420/btt335.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024663093","display_name":"Shandian Zhe","orcid":"https://orcid.org/0000-0003-0316-9875"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shandian Zhe","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Biology, and 3Department of Statistics, Purdue University, West Lafayette, IN 47907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Biology, and 3Department of Statistics, Purdue University, West Lafayette, IN 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058807679","display_name":"Syed Abbas Zilqurnain Naqvi","orcid":"https://orcid.org/0000-0002-9543-2281"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Syed A. Z. Naqvi","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Biology, and 3Department of Statistics, Purdue University, West Lafayette, IN 47907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Biology, and 3Department of Statistics, Purdue University, West Lafayette, IN 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032964730","display_name":"Yifan Yang","orcid":"https://orcid.org/0000-0001-9127-168X"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yifan Yang","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Biology, and 3Department of Statistics, Purdue University, West Lafayette, IN 47907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Biology, and 3Department of Statistics, Purdue University, West Lafayette, IN 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100676883","display_name":"Yuan Qi","orcid":"https://orcid.org/0000-0001-9718-7593"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yuan Qi","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Biology, and 3Department of Statistics, Purdue University, West Lafayette, IN 47907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Biology, and 3Department of Statistics, Purdue University, West Lafayette, IN 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100676883"],"corresponding_institution_ids":["https://openalex.org/I219193219"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7375,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.71716328,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"29","issue":"16","first_page":"1987","last_page":"1996"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9609000086784363,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9609000086784363,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.009399999864399433,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.008200000040233135,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/joint","display_name":"Joint (building)","score":0.7036445140838623},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.671905517578125},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.6043562889099121},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5998109579086304},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4606156349182129},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4020644426345825},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32722538709640503},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26891687512397766},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07543769478797913}],"concepts":[{"id":"https://openalex.org/C18555067","wikidata":"https://www.wikidata.org/wiki/Q8375051","display_name":"Joint (building)","level":2,"score":0.7036445140838623},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.671905517578125},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.6043562889099121},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5998109579086304},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4606156349182129},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4020644426345825},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32722538709640503},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26891687512397766},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07543769478797913},{"id":"https://openalex.org/C170154142","wikidata":"https://www.wikidata.org/wiki/Q150737","display_name":"Architectural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt335","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt335","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/1987/519420/btt335.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23749986","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23749986","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2715009","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3722525","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt335","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt335","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/1987/519420/btt335.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1739869781","display_name":null,"funder_award_id":"CCF-0939370","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5520569775","display_name":"CAREER: Scalable Bayesian learning for multi-source and multi-aspect data","funder_award_id":"1054903","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6244900323","display_name":"Emerging Frontiers of Science of Information","funder_award_id":"0939370","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6671297155","display_name":null,"funder_award_id":"CAREER","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7710229295","display_name":null,"funder_award_id":"IIS-1054903","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8927014883","display_name":"RI:Small: Relational learning and inference for network models","funder_award_id":"0916443","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2096514143.pdf","grobid_xml":"https://content.openalex.org/works/W2096514143.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W171292237","https://openalex.org/W1417555467","https://openalex.org/W1496451467","https://openalex.org/W1506806321","https://openalex.org/W1771155305","https://openalex.org/W1778696825","https://openalex.org/W1844343538","https://openalex.org/W1970554427","https://openalex.org/W1976564639","https://openalex.org/W1979996936","https://openalex.org/W1989015222","https://openalex.org/W2005879633","https://openalex.org/W2021505095","https://openalex.org/W2027803952","https://openalex.org/W2031622181","https://openalex.org/W2036183522","https://openalex.org/W2037044297","https://openalex.org/W2037510135","https://openalex.org/W2043163245","https://openalex.org/W2049974415","https://openalex.org/W2062601168","https://openalex.org/W2066365544","https://openalex.org/W2074875861","https://openalex.org/W2087454924","https://openalex.org/W2103288730","https://openalex.org/W2106505027","https://openalex.org/W2106863749","https://openalex.org/W2109708237","https://openalex.org/W2116063398","https://openalex.org/W2118860683","https://openalex.org/W2122825543","https://openalex.org/W2123106337","https://openalex.org/W2125716220","https://openalex.org/W2130410032","https://openalex.org/W2132555912","https://openalex.org/W2135046866","https://openalex.org/W2138019504","https://openalex.org/W2153939756","https://openalex.org/W2154947819","https://openalex.org/W2157852641","https://openalex.org/W2159398745","https://openalex.org/W2161148924","https://openalex.org/W2168849400","https://openalex.org/W2170414736","https://openalex.org/W2171215312","https://openalex.org/W2913668833","https://openalex.org/W2942992487","https://openalex.org/W3101256146","https://openalex.org/W3102022799","https://openalex.org/W4214553437","https://openalex.org/W6606997615","https://openalex.org/W6628368890","https://openalex.org/W6642707264","https://openalex.org/W6651546805","https://openalex.org/W6682737259"],"related_works":["https://openalex.org/W1996130883","https://openalex.org/W2748574964","https://openalex.org/W4205762803","https://openalex.org/W2888483922","https://openalex.org/W2535856026","https://openalex.org/W2265065644","https://openalex.org/W2367747139","https://openalex.org/W4391102217","https://openalex.org/W2134699697","https://openalex.org/W2566187525"],"abstract_inverted_index":{"MOTIVATION:":[0],"By":[1],"capturing":[2],"various":[3],"biochemical":[4],"interactions,":[5],"biological":[6,12,54,205],"pathways":[7,38],"provide":[8],"insight":[9],"into":[10],"underlying":[11],"processes.":[13],"Given":[14],"high-dimensional":[15,229],"microarray":[16],"or":[17,44],"RNA-sequencing":[18],"data,":[19],"a":[20,61,70,94,107,131,218],"critical":[21],"challenge":[22,49],"is":[23,214],"how":[24],"to":[25,34,209,216],"integrate":[26],"them":[27],"with":[28,146],"rich":[29],"information":[30,84],"from":[31,60,85],"pathway":[32,191,210],"databases":[33],"jointly":[35],"select":[36],"relevant":[37,195,225],"and":[39,58,78,89,98,133,171,188,197],"genes":[40,196],"for":[41,75,185],"phenotype":[42],"prediction":[43],"disease":[45],"prognosis.":[46],"Addressing":[47],"this":[48,66],"can":[50,234],"help":[51],"us":[52],"deepen":[53],"understanding":[55],"of":[56,96,116,141,153,174,200,221,227],"phenotypes":[57],"diseases":[59],"systems":[62],"perspective.":[63],"RESULTS:":[64],"In":[65,207],"article,":[67],"we":[68,105,129,193],"propose":[69,106],"novel":[71],"sparse":[72,108],"Bayesian":[73],"model":[74,82],"joint":[76],"network":[77,123,137,159],"node":[79],"selection.":[80],"This":[81],"integrates":[83],"networks":[86,154],"(e.g.":[87,91],"pathways)":[88],"nodes":[90,160],"genes)":[92],"by":[93,204],"hybrid":[95],"conditional":[97,103],"generative":[99,127],"components.":[100],"For":[101,125],"the":[102,126,151,162,189],"component,":[104,128],"prior":[109,135],"based":[110],"on":[111,181],"graph":[112],"Laplacian":[113],"matrices,":[114],"each":[115],"which":[117,201],"encodes":[118],"detailed":[119],"correlation":[120],"structures":[121],"between":[122],"nodes.":[124,138],"use":[130],"spike":[132],"slab":[134],"over":[136,177],"The":[139,232],"integration":[140],"these":[142],"two":[143],"components,":[144],"coupled":[145],"efficient":[147],"variational":[148],"inference,":[149],"enables":[150],"selection":[152,172],"as":[155,157],"well":[156],"correlated":[158,228],"in":[161,223],"selected":[163,194],"networks.":[164],"Simulation":[165],"results":[166],"demonstrate":[167],"improved":[168],"predictive":[169],"performance":[170],"accuracy":[173],"our":[175,212],"method":[176,213],"alternative":[178],"methods.":[179],"Based":[180],"three":[182],"expression":[183],"datasets":[184],"cancer":[186],"study":[187],"KEGG":[190],"database,":[192],"pathways,":[198],"many":[199],"are":[202],"supported":[203],"literature.":[206],"addition":[208],"analysis,":[211],"expected":[215],"have":[217],"wide":[219],"range":[220],"applications":[222],"selecting":[224],"groups":[226],"biomarkers.":[230],"AVAILABILITY:":[231],"code":[233],"be":[235],"downloaded":[236],"at":[237],"www.cs.purdue.edu/homes/szhe/software.html.":[238],"CONTACT:":[239],"alanqi@purdue.edu.":[240]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
