{"id":"https://openalex.org/W2110336313","doi":"https://doi.org/10.1093/bioinformatics/btt334","title":"NOA: a cytoscape plugin for network ontology analysis","display_name":"NOA: a cytoscape plugin for network ontology analysis","publication_year":2013,"publication_date":"2013-06-07","ids":{"openalex":"https://openalex.org/W2110336313","doi":"https://doi.org/10.1093/bioinformatics/btt334","mag":"2110336313","pmid":"https://pubmed.ncbi.nlm.nih.gov/23749961"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt334","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt334","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2066/49077136/bioinformatics_29_16_2066.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2066/49077136/bioinformatics_29_16_2066.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060215226","display_name":"Chao Zhang","orcid":"https://orcid.org/0000-0001-8019-7998"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Chao Zhang","raw_affiliation_strings":["1 Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, 2Beijing Institute of Genomics, 100029 and 3Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China, 4Gladstone Institutes, San Francisco, CA 94158, USA and 5Shanghai Institute for Biological Science, Chinese Academy of Sciences, 200031 China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, 2Beijing Institute of Genomics, 100029 and 3Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China, 4Gladstone Institutes, San Francisco, CA 94158, USA and 5Shanghai Institute for Biological Science, Chinese Academy of Sciences, 200031 China","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I19820366","https://openalex.org/I1321430492","https://openalex.org/I2801577699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101451440","display_name":"Jiguang Wang","orcid":"https://orcid.org/0000-0002-6923-4097"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jiguang Wang","raw_affiliation_strings":["1 Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, 2Beijing Institute of Genomics, 100029 and 3Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China, 4Gladstone Institutes, San Francisco, CA 94158, USA and 5Shanghai Institute for Biological Science, Chinese Academy of Sciences, 200031 China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, 2Beijing Institute of Genomics, 100029 and 3Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China, 4Gladstone Institutes, San Francisco, CA 94158, USA and 5Shanghai Institute for Biological Science, Chinese Academy of Sciences, 200031 China","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I19820366","https://openalex.org/I1321430492","https://openalex.org/I2801577699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063972221","display_name":"Kristina Hanspers","orcid":"https://orcid.org/0000-0001-5410-599X"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Kristina Hanspers","raw_affiliation_strings":["1 Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, 2Beijing Institute of Genomics, 100029 and 3Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China, 4Gladstone Institutes, San Francisco, CA 94158, USA and 5Shanghai Institute for Biological Science, Chinese Academy of Sciences, 200031 China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, 2Beijing Institute of Genomics, 100029 and 3Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China, 4Gladstone Institutes, San Francisco, CA 94158, USA and 5Shanghai Institute for Biological Science, Chinese Academy of Sciences, 200031 China","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I19820366","https://openalex.org/I1321430492","https://openalex.org/I2801577699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082428303","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0002-4809-0514"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Dong Xu","raw_affiliation_strings":["1 Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, 2Beijing Institute of Genomics, 100029 and 3Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China, 4Gladstone Institutes, San Francisco, CA 94158, USA and 5Shanghai Institute for Biological Science, Chinese Academy of Sciences, 200031 China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, 2Beijing Institute of Genomics, 100029 and 3Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China, 4Gladstone Institutes, San Francisco, CA 94158, USA and 5Shanghai Institute for Biological Science, Chinese Academy of Sciences, 200031 China","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I19820366","https://openalex.org/I1321430492","https://openalex.org/I2801577699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012283696","display_name":"Luonan Chen","orcid":"https://orcid.org/0000-0002-3960-0068"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Luonan Chen","raw_affiliation_strings":["1 Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, 2Beijing Institute of Genomics, 100029 and 3Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China, 4Gladstone Institutes, San Francisco, CA 94158, USA and 5Shanghai Institute for Biological Science, Chinese Academy of Sciences, 200031 China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, 2Beijing Institute of Genomics, 100029 and 3Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China, 4Gladstone Institutes, San Francisco, CA 94158, USA and 5Shanghai Institute for Biological Science, Chinese Academy of Sciences, 200031 China","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I19820366","https://openalex.org/I1321430492","https://openalex.org/I2801577699"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070456387","display_name":"Alexander R. Pico","orcid":"https://orcid.org/0000-0001-5706-2163"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Alexander R. Pico","raw_affiliation_strings":["1 Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, 2Beijing Institute of Genomics, 100029 and 3Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China, 4Gladstone Institutes, San Francisco, CA 94158, USA and 5Shanghai Institute for Biological Science, Chinese Academy of Sciences, 200031 China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, 2Beijing Institute of Genomics, 100029 and 3Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China, 4Gladstone Institutes, San Francisco, CA 94158, USA and 5Shanghai Institute for Biological Science, Chinese Academy of Sciences, 200031 China","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I19820366","https://openalex.org/I1321430492","https://openalex.org/I2801577699"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5060215226"],"corresponding_institution_ids":["https://openalex.org/I1321430492","https://openalex.org/I19820366","https://openalex.org/I2801577699","https://openalex.org/I76835614"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.0928,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.87169616,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"29","issue":"16","first_page":"2066","last_page":"2067"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.9398226737976074},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7245925068855286},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6665182113647461},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5165625810623169},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5061697363853455},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.44554391503334045},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.43993017077445984},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3898683786392212},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.33808523416519165},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18568503856658936},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10320526361465454}],"concepts":[{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.9398226737976074},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7245925068855286},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6665182113647461},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5165625810623169},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5061697363853455},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.44554391503334045},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.43993017077445984},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3898683786392212},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.33808523416519165},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18568503856658936},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10320526361465454},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btt334","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt334","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2066/49077136/bioinformatics_29_16_2066.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23749961","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23749961","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3722524","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3722524","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-81491","is_oa":false,"landing_page_url":"http://repository.hkust.edu.hk/ir/Record/1783.1-81491","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt334","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt334","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2066/49077136/bioinformatics_29_16_2066.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4412323338","display_name":null,"funder_award_id":"GM103504","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5180836318","display_name":null,"funder_award_id":"GM10350","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5427449508","display_name":null,"funder_award_id":"R01-GM100701","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7213916153","display_name":null,"funder_award_id":"GM100701","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7457446263","display_name":null,"funder_award_id":"11131009","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8426690845","display_name":null,"funder_award_id":"91029301","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8455906958","display_name":null,"funder_award_id":"P41-GM103504","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2110336313.pdf","grobid_xml":"https://content.openalex.org/works/W2110336313.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1996086117","https://openalex.org/W2040676413","https://openalex.org/W2058313025","https://openalex.org/W2120680184","https://openalex.org/W2164129975","https://openalex.org/W2171030481"],"related_works":["https://openalex.org/W4298269242","https://openalex.org/W4298401663","https://openalex.org/W2924735795","https://openalex.org/W4386041260","https://openalex.org/W4300787769","https://openalex.org/W4302475558","https://openalex.org/W4301355831","https://openalex.org/W4298345637","https://openalex.org/W1964405022","https://openalex.org/W2909970103"],"abstract_inverted_index":{"The":[0],"NOA":[1],"plugin":[2,21],"is":[3,27],"an":[4],"open":[5],"source,":[6],"Java":[7],"program":[8],"for":[9],"Cytoscape":[10,16],"version":[11],"2.8":[12],"available":[13,28],"via":[14],"the":[15],"App":[17],"Store":[18],"(http://apps.cytoscape.org/apps/noa)":[19],"and":[20],"manager.":[22],"A":[23],"detailed":[24],"user":[25],"manual":[26],"at":[29],"http://nrnb.org/tools/noa.":[30],".ucsf.edu":[31]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":5}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
