{"id":"https://openalex.org/W2119541508","doi":"https://doi.org/10.1093/bioinformatics/btt327","title":"Inferring disease association using clinical factors in a combinatorial manner and their use in drug repositioning","display_name":"Inferring disease association using clinical factors in a combinatorial manner and their use in drug repositioning","publication_year":2013,"publication_date":"2013-06-08","ids":{"openalex":"https://openalex.org/W2119541508","doi":"https://doi.org/10.1093/bioinformatics/btt327","mag":"2119541508","pmid":"https://pubmed.ncbi.nlm.nih.gov/23749956"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt327","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt327","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2017/49076641/bioinformatics_29_16_2017.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2017/49076641/bioinformatics_29_16_2017.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103282907","display_name":"Jin\u2010Myung Jung","orcid":"https://orcid.org/0000-0002-4962-8347"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Jinmyung Jung","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea","Department of Bio and Brain Engineering, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon, 305-701, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon, 305-701, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037879375","display_name":"Doheon Lee","orcid":"https://orcid.org/0000-0001-9070-4316"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Doheon Lee","raw_affiliation_strings":["Department of Bio and Brain Engineering, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea","Department of Bio and Brain Engineering, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon, 305-701, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"Department of Bio and Brain Engineering, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon, 305-701, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5037879375","https://openalex.org/A5103282907"],"corresponding_institution_ids":["https://openalex.org/I157485424"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6877,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.69878475,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"29","issue":"16","first_page":"2017","last_page":"2023"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.7956963777542114},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.6225453615188599},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6207435131072998},{"id":"https://openalex.org/keywords/association-rule-learning","display_name":"Association rule learning","score":0.4495502710342407},{"id":"https://openalex.org/keywords/national-health-and-nutrition-examination-survey","display_name":"National Health and Nutrition Examination Survey","score":0.4392079710960388},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.41467130184173584},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40363043546676636},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.357181191444397},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3301435708999634},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18389657139778137},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.1771451234817505},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.13087362051010132},{"id":"https://openalex.org/keywords/environmental-health","display_name":"Environmental health","score":0.10661369562149048}],"concepts":[{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.7956963777542114},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.6225453615188599},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6207435131072998},{"id":"https://openalex.org/C193524817","wikidata":"https://www.wikidata.org/wiki/Q386780","display_name":"Association rule learning","level":2,"score":0.4495502710342407},{"id":"https://openalex.org/C2779874844","wikidata":"https://www.wikidata.org/wiki/Q1967281","display_name":"National Health and Nutrition Examination Survey","level":3,"score":0.4392079710960388},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41467130184173584},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40363043546676636},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.357181191444397},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3301435708999634},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18389657139778137},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.1771451234817505},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.13087362051010132},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.10661369562149048},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009749","descriptor_name":"Nutrition Surveys","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009749","descriptor_name":"Nutrition Surveys","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009749","descriptor_name":"Nutrition Surveys","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012307","descriptor_name":"Risk Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012307","descriptor_name":"Risk Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012307","descriptor_name":"Risk Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt327","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt327","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2017/49076641/bioinformatics_29_16_2017.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23749956","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23749956","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt327","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt327","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2017/49076641/bioinformatics_29_16_2017.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3804201162","display_name":null,"funder_award_id":"2012M3A9C4048758","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G6340052926","display_name":null,"funder_award_id":"NRF-2012M3A9C4048758","funder_id":"https://openalex.org/F4320322030","funder_display_name":"Ministry of Science, ICT and Future Planning"},{"id":"https://openalex.org/G6748919361","display_name":null,"funder_award_id":"2012M3A9C4048758","funder_id":"https://openalex.org/F4320322030","funder_display_name":"Ministry of Science, ICT and Future Planning"},{"id":"https://openalex.org/G7650184580","display_name":null,"funder_award_id":"NRF-2012M3A9C4048758","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322030","display_name":"Ministry of Science, ICT and Future Planning","ror":"https://ror.org/032e49973"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2119541508.pdf","grobid_xml":"https://content.openalex.org/works/W2119541508.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1500691474","https://openalex.org/W1963805301","https://openalex.org/W1984789788","https://openalex.org/W1995027235","https://openalex.org/W2009055819","https://openalex.org/W2010707723","https://openalex.org/W2014759828","https://openalex.org/W2016702334","https://openalex.org/W2017314199","https://openalex.org/W2026389032","https://openalex.org/W2053202663","https://openalex.org/W2058130483","https://openalex.org/W2062533676","https://openalex.org/W2070412788","https://openalex.org/W2083045667","https://openalex.org/W2085461582","https://openalex.org/W2099701744","https://openalex.org/W2104948653","https://openalex.org/W2118415328","https://openalex.org/W2120539430","https://openalex.org/W2125380142","https://openalex.org/W2133990480","https://openalex.org/W2137632714","https://openalex.org/W2138512826","https://openalex.org/W2150722389","https://openalex.org/W2152415104","https://openalex.org/W2164456230","https://openalex.org/W2167491049","https://openalex.org/W2256786579"],"related_works":["https://openalex.org/W2002269994","https://openalex.org/W4301860395","https://openalex.org/W4385309683","https://openalex.org/W4300910683","https://openalex.org/W4300636294","https://openalex.org/W4300192063","https://openalex.org/W2908788734","https://openalex.org/W4300115496","https://openalex.org/W2392697706","https://openalex.org/W366033468"],"abstract_inverted_index":{"MOTIVATION:":[0],"Complex":[1],"physiological":[2,36],"relationships":[3],"exist":[4],"among":[5],"human":[6],"diseases.":[7],"Thus,":[8],"the":[9,40,76,85,94,118,127,137,172,178],"identification":[10],"of":[11,18,35,43,111,139,174],"disease":[12,19,30,60,91,152,162],"associations":[13,61,176],"could":[14],"provide":[15,171],"new":[16,165],"methods":[17],"care":[20],"and":[21,79,84,148,170],"diagnosis.":[22],"To":[23],"this":[24,56,131,140,155],"end,":[25],"numerous":[26],"studies":[27],"have":[28,87,142],"investigated":[29],"associations.":[31],"However,":[32],"combinatorial":[33,72],"effect":[34],"factors,":[37],"which":[38],"is":[39],"main":[41],"characteristic":[42],"biological":[44],"systems,":[45],"has":[46],"not":[47],"been":[48,88],"considered":[49,67],"in":[50,71,130,154],"most":[51],"previous":[52],"studies.":[53],"RESULTS:":[54],"In":[55,114],"study,":[57],"we":[58,116,134,158],"inferred":[59],"with":[62],"a":[63,106,160],"novel":[64],"approach":[65],"that":[66,136],"disease-related":[68],"clinical":[69,107,120],"factors":[70],"ways":[73],"by":[74],"using":[75],"National":[77],"Health":[78],"Nutrition":[80],"Examination":[81],"Survey":[82],"data,":[83],"results":[86,138],"shown":[89],"as":[90,164],"networks.":[92],"Here,":[93],"FP-growth":[95],"algorithm,":[96,101],"an":[97],"association":[98],"rule":[99],"mining":[100],"was":[102],"used":[103],"to":[104],"generate":[105],"attribute":[108,122],"combination":[109],"profile":[110],"each":[112],"disease.":[113],"addition,":[115],"characterized":[117],"22":[119],"risk":[121],"combinations":[123],"frequently":[124],"discovered":[125],"from":[126,177],"26":[128],"diseases":[129],"study.":[132],"Furthermore,":[133],"validated":[135],"study":[141],"great":[143],"potential":[144],"for":[145,167],"drug":[146,168],"repositioning":[147,169],"outperform":[149],"other":[150],"existing":[151],"networks":[153],"regard.":[156],"Finally,":[157],"suggest":[159],"few":[161],"pairs":[163],"candidates":[166],"evidence":[173],"their":[175],"literature.":[179]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
