{"id":"https://openalex.org/W2134356816","doi":"https://doi.org/10.1093/bioinformatics/btt325","title":"WhichCyp: prediction of cytochromes P450 inhibition","display_name":"WhichCyp: prediction of cytochromes P450 inhibition","publication_year":2013,"publication_date":"2013-06-05","ids":{"openalex":"https://openalex.org/W2134356816","doi":"https://doi.org/10.1093/bioinformatics/btt325","mag":"2134356816","pmid":"https://pubmed.ncbi.nlm.nih.gov/23740742"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt325","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt325","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2051/49076988/bioinformatics_29_16_2051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2051/49076988/bioinformatics_29_16_2051.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065625027","display_name":"Micha\u0142 Rostkowski","orcid":"https://orcid.org/0000-0002-2254-1049"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK","SE"],"is_corresponding":true,"raw_author_name":"Micha\u0142 Rostkowski","raw_affiliation_strings":["1 Department of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark and 2Department of Pharmaceutical Biosciences, Uppsala University, P.O. Box 591, SE-751-24 Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark and 2Department of Pharmaceutical Biosciences, Uppsala University, P.O. Box 591, SE-751-24 Uppsala, Sweden","institution_ids":["https://openalex.org/I124055696","https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046663348","display_name":"Ola Spjuth","orcid":"https://orcid.org/0000-0002-8083-2864"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK","SE"],"is_corresponding":false,"raw_author_name":"Ola Spjuth","raw_affiliation_strings":["1 Department of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark and 2Department of Pharmaceutical Biosciences, Uppsala University, P.O. Box 591, SE-751-24 Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark and 2Department of Pharmaceutical Biosciences, Uppsala University, P.O. Box 591, SE-751-24 Uppsala, Sweden","institution_ids":["https://openalex.org/I124055696","https://openalex.org/I123387679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029979966","display_name":"Patrik Rydberg","orcid":"https://orcid.org/0000-0001-6108-9246"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK","SE"],"is_corresponding":false,"raw_author_name":"Patrik Rydberg","raw_affiliation_strings":["1 Department of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark and 2Department of Pharmaceutical Biosciences, Uppsala University, P.O. Box 591, SE-751-24 Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark and 2Department of Pharmaceutical Biosciences, Uppsala University, P.O. Box 591, SE-751-24 Uppsala, Sweden","institution_ids":["https://openalex.org/I124055696","https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065625027"],"corresponding_institution_ids":["https://openalex.org/I123387679","https://openalex.org/I124055696"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":7.8202,"has_fulltext":true,"cited_by_count":67,"citation_normalized_percentile":{"value":0.97836417,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"29","issue":"16","first_page":"2051","last_page":"2052"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.742574155330658},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6985096335411072},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.663580596446991},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.6321038603782654},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.46568384766578674},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4529914855957031},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3568199872970581},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3207901120185852},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3206428289413452},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.30585989356040955},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2818974554538727},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.19730594754219055}],"concepts":[{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.742574155330658},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6985096335411072},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.663580596446991},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.6321038603782654},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.46568384766578674},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4529914855957031},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3568199872970581},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3207901120185852},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3206428289413452},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.30585989356040955},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2818974554538727},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.19730594754219055}],"mesh":[{"descriptor_ui":"D004791","descriptor_name":"Enzyme Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D004791","descriptor_name":"Enzyme Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D004791","descriptor_name":"Enzyme Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D004791","descriptor_name":"Enzyme Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004791","descriptor_name":"Enzyme Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004791","descriptor_name":"Enzyme Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007527","descriptor_name":"Isoenzymes","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D007527","descriptor_name":"Isoenzymes","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D007527","descriptor_name":"Isoenzymes","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D065607","descriptor_name":"Cytochrome P-450 Enzyme Inhibitors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D065607","descriptor_name":"Cytochrome P-450 Enzyme Inhibitors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D065607","descriptor_name":"Cytochrome P-450 Enzyme Inhibitors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt325","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt325","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2051/49076988/bioinformatics_29_16_2051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23740742","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23740742","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/33792f42-21c0-44a5-87fd-07ed4cf64fb4","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/33792f42-21c0-44a5-87fd-07ed4cf64fb4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Rostkowski , M , Spjuth , O & Rydberg , P 2013 , ' WhichCyp : prediction of cytochromes P450 inhibition ' , Bioinformatics , vol. 29 , no. 16 , pp. 2051-2052 . https://doi.org/10.1093/bioinformatics/btt325","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt325","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt325","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/16/2051/49076988/bioinformatics_29_16_2051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134356816.pdf","grobid_xml":"https://content.openalex.org/works/W2134356816.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W84368778","https://openalex.org/W1828735316","https://openalex.org/W2022603596","https://openalex.org/W2029380217","https://openalex.org/W2045776044","https://openalex.org/W2047009021","https://openalex.org/W2090505208","https://openalex.org/W2096560421","https://openalex.org/W2096705340","https://openalex.org/W2098889731","https://openalex.org/W2104925243","https://openalex.org/W2109553965","https://openalex.org/W2119821739","https://openalex.org/W2144474034","https://openalex.org/W2148797284","https://openalex.org/W2153635508","https://openalex.org/W2161104773","https://openalex.org/W2167130649","https://openalex.org/W2169678694","https://openalex.org/W2213735563","https://openalex.org/W4239510810"],"related_works":["https://openalex.org/W2749690376","https://openalex.org/W2786317006","https://openalex.org/W4367724653","https://openalex.org/W2788563018","https://openalex.org/W4395962217","https://openalex.org/W2997587123","https://openalex.org/W4281673905","https://openalex.org/W3206385231","https://openalex.org/W1566482460","https://openalex.org/W3081644756"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"In":[2],"this":[3],"work":[4],"we":[5],"present":[6],"WhichCyp,":[7],"a":[8,24],"tool":[9],"for":[10,53,71],"prediction":[11],"of":[12],"which":[13],"cytochromes":[14],"P450":[15],"isoforms":[16],"(among":[17],"1A2,":[18],"2C9,":[19],"2C19,":[20],"2D6":[21],"and":[22,43,65],"3A4)":[23],"given":[25],"molecule":[26],"is":[27,50,68],"likely":[28],"to":[29],"inhibit.":[30],"The":[31,47],"models":[32],"are":[33,79],"built":[34],"from":[35],"experimental":[36],"high-throughput":[37],"data":[38,78],"using":[39],"support":[40],"vector":[41],"machines":[42],"molecular":[44],"signatures.":[45],"Availability:":[46],"WhichCyp":[48,62],"server":[49],"freely":[51],"available":[52,70,80],"use":[54],"on":[55],"the":[56,61],"web":[57],"at":[58,81],"http://drug.ku.dk/whichcyp,":[59],"where":[60],"Java":[63],"program":[64],"source":[66],"code":[67],"also":[69],"download.":[72],"Contact:":[73],"pry@sund.ku.dk":[74],"Supplementary":[75,77],"information:":[76],"Bioinformatics":[82],"online.":[83]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-24T08:33:08.758527","created_date":"2025-10-10T00:00:00"}
