{"id":"https://openalex.org/W2127781493","doi":"https://doi.org/10.1093/bioinformatics/btt273","title":"GAGE-B: an evaluation of genome assemblers for bacterial organisms","display_name":"GAGE-B: an evaluation of genome assemblers for bacterial organisms","publication_year":2013,"publication_date":"2013-05-10","ids":{"openalex":"https://openalex.org/W2127781493","doi":"https://doi.org/10.1093/bioinformatics/btt273","mag":"2127781493","pmid":"https://pubmed.ncbi.nlm.nih.gov/23665771"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt273","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt273","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/14/1718/48887988/bioinformatics_29_14_1718.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/14/1718/48887988/bioinformatics_29_14_1718.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065453594","display_name":"Tanja Mago\u010d","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Tanja Magoc","raw_affiliation_strings":["1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I145311948","https://openalex.org/I143397708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089456984","display_name":"Stephan Pabinger","orcid":"https://orcid.org/0000-0001-9876-5965"},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Stephan Pabinger","raw_affiliation_strings":["1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I145311948","https://openalex.org/I143397708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055704933","display_name":"Stefan Canzar","orcid":"https://orcid.org/0000-0003-4719-8010"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Stefan Canzar","raw_affiliation_strings":["1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I145311948","https://openalex.org/I143397708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100757863","display_name":"Xinyue Liu","orcid":"https://orcid.org/0000-0001-7905-3831"},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Xinyue Liu","raw_affiliation_strings":["1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I145311948","https://openalex.org/I143397708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055753548","display_name":"Qi Su","orcid":"https://orcid.org/0000-0001-9100-387X"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Qi Su","raw_affiliation_strings":["1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I145311948","https://openalex.org/I143397708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036638042","display_name":"Daniela Puiu","orcid":"https://orcid.org/0000-0002-2386-9265"},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Daniela Puiu","raw_affiliation_strings":["1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I145311948","https://openalex.org/I143397708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032805931","display_name":"Luke J. Tallon","orcid":"https://orcid.org/0000-0002-4656-4480"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Luke J. Tallon","raw_affiliation_strings":["1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I145311948","https://openalex.org/I143397708"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010384159","display_name":"Steven L. Salzberg","orcid":"https://orcid.org/0000-0002-8859-7432"},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["AT","US"],"is_corresponding":true,"raw_author_name":"Steven L. Salzberg","raw_affiliation_strings":["1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA, 2Division for Bioinformatics, Innsbruck Medical University, 6020 Innsbruck, Austria and 3Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I145311948","https://openalex.org/I143397708"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5010384159"],"corresponding_institution_ids":["https://openalex.org/I126744593","https://openalex.org/I143397708","https://openalex.org/I145311948"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":13.4538,"has_fulltext":true,"cited_by_count":158,"citation_normalized_percentile":{"value":0.99291634,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"29","issue":"14","first_page":"1718","last_page":"1725"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5841173529624939},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5379410982131958},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48696669936180115},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.4249446392059326},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4004170894622803},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.324485182762146},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15481135249137878}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5841173529624939},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5379410982131958},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48696669936180115},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.4249446392059326},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4004170894622803},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.324485182762146},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15481135249137878}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btt273","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt273","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/14/1718/48887988/bioinformatics_29_14_1718.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23665771","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23665771","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2698240","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3702249","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3702249","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3702249","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt273","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt273","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/14/1718/48887988/bioinformatics_29_14_1718.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1914338789","display_name":null,"funder_award_id":"R01-HG006677","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3473995101","display_name":null,"funder_award_id":"HHSN2722009000","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4851847132","display_name":null,"funder_award_id":"HHSN272200900009C","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G632460639","display_name":null,"funder_award_id":"HG006677","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G702934506","display_name":null,"funder_award_id":"2009-35205-05209","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G7474151348","display_name":null,"funder_award_id":"2011-67009-30030","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G7657707305","display_name":null,"funder_award_id":"2009-35205-05209","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G8358044430","display_name":null,"funder_award_id":"HHSN272200900009C","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127781493.pdf","grobid_xml":"https://content.openalex.org/works/W2127781493.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1881605914","https://openalex.org/W1966822396","https://openalex.org/W1971403296","https://openalex.org/W2022986961","https://openalex.org/W2033531015","https://openalex.org/W2095685450","https://openalex.org/W2095841885","https://openalex.org/W2096634299","https://openalex.org/W2107282968","https://openalex.org/W2107772251","https://openalex.org/W2115501618","https://openalex.org/W2120457919","https://openalex.org/W2120902911","https://openalex.org/W2127768708","https://openalex.org/W2129933858","https://openalex.org/W2132787769","https://openalex.org/W2135361281","https://openalex.org/W2152073175","https://openalex.org/W2152331922","https://openalex.org/W2157068560","https://openalex.org/W2158714788","https://openalex.org/W2160969485","https://openalex.org/W2161546116","https://openalex.org/W2167719367","https://openalex.org/W2170551349","https://openalex.org/W2170747616","https://openalex.org/W6639372236"],"related_works":["https://openalex.org/W2889029343","https://openalex.org/W2079327011","https://openalex.org/W2056973287","https://openalex.org/W3111025641","https://openalex.org/W2061340009","https://openalex.org/W3202542829","https://openalex.org/W1965562485","https://openalex.org/W1956137100","https://openalex.org/W2340204314","https://openalex.org/W2046657386"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":17},{"year":2016,"cited_by_count":27},{"year":2015,"cited_by_count":26},{"year":2014,"cited_by_count":31},{"year":2013,"cited_by_count":6}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
