{"id":"https://openalex.org/W2154449852","doi":"https://doi.org/10.1093/bioinformatics/btt256","title":"Further Steps in TANGO: improved taxonomic assignment in metagenomics","display_name":"Further Steps in TANGO: improved taxonomic assignment in metagenomics","publication_year":2013,"publication_date":"2013-05-03","ids":{"openalex":"https://openalex.org/W2154449852","doi":"https://doi.org/10.1093/bioinformatics/btt256","mag":"2154449852","pmid":"https://pubmed.ncbi.nlm.nih.gov/23645816"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt256","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt256","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/17/48913127/bioinformatics_30_1_17.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/17/48913127/bioinformatics_30_1_17.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107502255","display_name":"Daniel Alonso-Alemany","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210160189","display_name":"Institut Polytechnique de Bordeaux","ror":"https://ror.org/054qv7y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Daniel Alonso-Alemany","raw_affiliation_strings":["1 Department of Software, Technical University of Catalonia, E-08034 Barcelona, Spain, 2Universit\u00e9 Bordeaux, Bordeaux Bioinformatics Center (CBiB), F-33000 Bordeaux, France, 3Dipartimento di Informatica Sistemistica e Comunicazione, Universit\u00e0 Degli Studi di Milano-Bicocca, I-20125 Milan, Italy and 4Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique (CNRS/LaBRI), F-33405 Talence, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Software, Technical University of Catalonia, E-08034 Barcelona, Spain, 2Universit\u00e9 Bordeaux, Bordeaux Bioinformatics Center (CBiB), F-33000 Bordeaux, France, 3Dipartimento di Informatica Sistemistica e Comunicazione, Universit\u00e0 Degli Studi di Milano-Bicocca, I-20125 Milan, Italy and 4Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique (CNRS/LaBRI), F-33405 Talence, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210160189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115588125","display_name":"Aur\u00e9lien Barr\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210160189","display_name":"Institut Polytechnique de Bordeaux","ror":"https://ror.org/054qv7y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Aur\u00e9lien Barr\u00e9","raw_affiliation_strings":["1 Department of Software, Technical University of Catalonia, E-08034 Barcelona, Spain, 2Universit\u00e9 Bordeaux, Bordeaux Bioinformatics Center (CBiB), F-33000 Bordeaux, France, 3Dipartimento di Informatica Sistemistica e Comunicazione, Universit\u00e0 Degli Studi di Milano-Bicocca, I-20125 Milan, Italy and 4Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique (CNRS/LaBRI), F-33405 Talence, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Software, Technical University of Catalonia, E-08034 Barcelona, Spain, 2Universit\u00e9 Bordeaux, Bordeaux Bioinformatics Center (CBiB), F-33000 Bordeaux, France, 3Dipartimento di Informatica Sistemistica e Comunicazione, Universit\u00e0 Degli Studi di Milano-Bicocca, I-20125 Milan, Italy and 4Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique (CNRS/LaBRI), F-33405 Talence, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210160189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080398207","display_name":"Stefano Beretta","orcid":"https://orcid.org/0000-0003-4375-004X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210160189","display_name":"Institut Polytechnique de Bordeaux","ror":"https://ror.org/054qv7y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Stefano Beretta","raw_affiliation_strings":["1 Department of Software, Technical University of Catalonia, E-08034 Barcelona, Spain, 2Universit\u00e9 Bordeaux, Bordeaux Bioinformatics Center (CBiB), F-33000 Bordeaux, France, 3Dipartimento di Informatica Sistemistica e Comunicazione, Universit\u00e0 Degli Studi di Milano-Bicocca, I-20125 Milan, Italy and 4Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique (CNRS/LaBRI), F-33405 Talence, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Software, Technical University of Catalonia, E-08034 Barcelona, Spain, 2Universit\u00e9 Bordeaux, Bordeaux Bioinformatics Center (CBiB), F-33000 Bordeaux, France, 3Dipartimento di Informatica Sistemistica e Comunicazione, Universit\u00e0 Degli Studi di Milano-Bicocca, I-20125 Milan, Italy and 4Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique (CNRS/LaBRI), F-33405 Talence, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210160189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038691764","display_name":"Paola Bonizzoni","orcid":"https://orcid.org/0000-0001-7289-4988"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210160189","display_name":"Institut Polytechnique de Bordeaux","ror":"https://ror.org/054qv7y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Paola Bonizzoni","raw_affiliation_strings":["1 Department of Software, Technical University of Catalonia, E-08034 Barcelona, Spain, 2Universit\u00e9 Bordeaux, Bordeaux Bioinformatics Center (CBiB), F-33000 Bordeaux, France, 3Dipartimento di Informatica Sistemistica e Comunicazione, Universit\u00e0 Degli Studi di Milano-Bicocca, I-20125 Milan, Italy and 4Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique (CNRS/LaBRI), F-33405 Talence, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Software, Technical University of Catalonia, E-08034 Barcelona, Spain, 2Universit\u00e9 Bordeaux, Bordeaux Bioinformatics Center (CBiB), F-33000 Bordeaux, France, 3Dipartimento di Informatica Sistemistica e Comunicazione, Universit\u00e0 Degli Studi di Milano-Bicocca, I-20125 Milan, Italy and 4Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique (CNRS/LaBRI), F-33405 Talence, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210160189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073536063","display_name":"Macha Nikolski","orcid":"https://orcid.org/0000-0001-6059-577X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210160189","display_name":"Institut Polytechnique de Bordeaux","ror":"https://ror.org/054qv7y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Macha Nikolski","raw_affiliation_strings":["1 Department of Software, Technical University of Catalonia, E-08034 Barcelona, Spain, 2Universit\u00e9 Bordeaux, Bordeaux Bioinformatics Center (CBiB), F-33000 Bordeaux, France, 3Dipartimento di Informatica Sistemistica e Comunicazione, Universit\u00e0 Degli Studi di Milano-Bicocca, I-20125 Milan, Italy and 4Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique (CNRS/LaBRI), F-33405 Talence, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Software, Technical University of Catalonia, E-08034 Barcelona, Spain, 2Universit\u00e9 Bordeaux, Bordeaux Bioinformatics Center (CBiB), F-33000 Bordeaux, France, 3Dipartimento di Informatica Sistemistica e Comunicazione, Universit\u00e0 Degli Studi di Milano-Bicocca, I-20125 Milan, Italy and 4Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique (CNRS/LaBRI), F-33405 Talence, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210160189"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005629452","display_name":"Gabriel Valiente","orcid":"https://orcid.org/0000-0001-9194-2703"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210160189","display_name":"Institut Polytechnique de Bordeaux","ror":"https://ror.org/054qv7y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Gabriel Valiente","raw_affiliation_strings":["1 Department of Software, Technical University of Catalonia, E-08034 Barcelona, Spain, 2Universit\u00e9 Bordeaux, Bordeaux Bioinformatics Center (CBiB), F-33000 Bordeaux, France, 3Dipartimento di Informatica Sistemistica e Comunicazione, Universit\u00e0 Degli Studi di Milano-Bicocca, I-20125 Milan, Italy and 4Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique (CNRS/LaBRI), F-33405 Talence, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Software, Technical University of Catalonia, E-08034 Barcelona, Spain, 2Universit\u00e9 Bordeaux, Bordeaux Bioinformatics Center (CBiB), F-33000 Bordeaux, France, 3Dipartimento di Informatica Sistemistica e Comunicazione, Universit\u00e0 Degli Studi di Milano-Bicocca, I-20125 Milan, Italy and 4Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique (CNRS/LaBRI), F-33405 Talence, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210160189"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5005629452"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210160189"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.8335,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.7306079,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"30","issue":"1","first_page":"17","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8851000070571899,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8851000070571899,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.020500000566244125,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.008200000040233135,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.9195610284805298},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5219064354896545},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4391433596611023},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4248623847961426},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3508385419845581},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18391278386116028},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10201740264892578}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9195610284805298},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5219064354896545},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4391433596611023},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4248623847961426},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3508385419845581},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18391278386116028},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10201740264892578}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btt256","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt256","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/17/48913127/bioinformatics_30_1_17.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23645816","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23645816","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:HAL:hal-00848263v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00848263","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2013, pp.10.1093/bioinformatics/btt256. &#x27E8;10.1093/bioinformatics/btt256&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:boa.unimib.it:10281/49207","is_oa":false,"landing_page_url":"http://hdl.handle.net/10281/49207","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:100775","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/100775","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt256","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt256","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/17/48913127/bioinformatics_30_1_17.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G307671218","display_name":null,"funder_award_id":"PRIN 2010-2011 \u201c","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G3653413569","display_name":null,"funder_award_id":"2010-2011","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G385539970","display_name":null,"funder_award_id":"(PRIN 2010)","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G4244614701","display_name":null,"funder_award_id":"H41J12000190001","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"}],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154449852.pdf","grobid_xml":"https://content.openalex.org/works/W2154449852.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W2022307218","https://openalex.org/W2042160423","https://openalex.org/W2055043387","https://openalex.org/W2074104070","https://openalex.org/W2087671769","https://openalex.org/W2111560651","https://openalex.org/W2116895571","https://openalex.org/W2120895683","https://openalex.org/W2134751812","https://openalex.org/W2142678031","https://openalex.org/W2148181108","https://openalex.org/W2149573313","https://openalex.org/W2150934173","https://openalex.org/W2153456263","https://openalex.org/W2154026962","https://openalex.org/W2155066423","https://openalex.org/W2158877985","https://openalex.org/W2160681728","https://openalex.org/W2162058902","https://openalex.org/W2752061190","https://openalex.org/W2752853835"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2210738511","https://openalex.org/W2487541429","https://openalex.org/W1910109602","https://openalex.org/W2080583581","https://openalex.org/W4297131566","https://openalex.org/W2017364432","https://openalex.org/W2329606903","https://openalex.org/W3156493549","https://openalex.org/W3195915274"],"abstract_inverted_index":{"MOTIVATION:":[0],"TANGO":[1,42,87],"is":[2,127],"one":[3],"of":[4,13,18,52,111],"the":[5,10,19,22,41,49,66,77,80,85,121],"most":[6],"accurate":[7],"tools":[8],"for":[9],"taxonomic":[11,27,50],"assignment":[12,28,51,81,122],"sequence":[14],"reads.":[15],"However,":[16],"because":[17],"differences":[20],"in":[21,79,89],"taxonomy":[23],"structures,":[24],"performing":[25],"a":[26,53],"on":[29,97,104,123],"different":[30,62,124],"reference":[31,58,125],"taxonomies":[32],"will":[33],"produce":[34],"divergent":[35],"results.":[36],"RESULTS:":[37],"We":[38,64,83],"have":[39],"improved":[40],"pipeline":[43,88],"to":[44,47,71,119],"be":[45],"able":[46],"perform":[48,120],"metagenomic":[54,100],"sample":[55],"using":[56],"alternative":[57],"taxonomies,":[59,126],"coming":[60],"from":[61],"sources.":[63],"highlight":[65],"novel":[67,117],"pre-processing":[68],"step,":[69],"necessary":[70],"accomplish":[72],"this":[73],"task,":[74],"and":[75,102,116],"describe":[76],"improvements":[78,115],"process.":[82],"present":[84],"new":[86,109],"details,":[90],"and,":[91],"finally,":[92],"we":[93],"show":[94],"its":[95],"performance":[96],"four":[98],"real":[99],"datasets":[101],"also":[103],"synthetic":[105],"datasets.":[106],"AVAILABILITY:":[107],"The":[108],"version":[110],"TANGO,":[112],"including":[113],"implementation":[114],"developments":[118],"freely":[128],"available":[129],"at":[130],"http://sourceforge.net/projects/taxoassignment/.":[131]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
