{"id":"https://openalex.org/W1973743008","doi":"https://doi.org/10.1093/bioinformatics/btt236","title":"Simple topological properties predict functional misannotations in a metabolic network","display_name":"Simple topological properties predict functional misannotations in a metabolic network","publication_year":2013,"publication_date":"2013-06-19","ids":{"openalex":"https://openalex.org/W1973743008","doi":"https://doi.org/10.1093/bioinformatics/btt236","mag":"1973743008","pmid":"https://pubmed.ncbi.nlm.nih.gov/23812979"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt236","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/13/i154/18536046/btt236.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/13/i154/18536046/btt236.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090349012","display_name":"Rodrigo Liberal","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Rodrigo Liberal","raw_affiliation_strings":["Department of Life Sciences and Centre for Integrative Systems Biology and Bioinformatics, Imperial College London, London SW7 2AZ, UK"],"affiliations":[{"raw_affiliation_string":"Department of Life Sciences and Centre for Integrative Systems Biology and Bioinformatics, Imperial College London, London SW7 2AZ, UK","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012024356","display_name":"John W. Pinney","orcid":"https://orcid.org/0000-0003-1813-2901"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John W. Pinney","raw_affiliation_strings":["Department of Life Sciences and Centre for Integrative Systems Biology and Bioinformatics, Imperial College London, London, SW7 2AZ, UK","Department of Life Sciences and Centre for Integrative Systems Biology and Bioinformatics, Imperial College London, London SW7 2AZ, UK"],"affiliations":[{"raw_affiliation_string":"Department of Life Sciences and Centre for Integrative Systems Biology and Bioinformatics, Imperial College London, London, SW7 2AZ, UK","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Life Sciences and Centre for Integrative Systems Biology and Bioinformatics, Imperial College London, London SW7 2AZ, UK","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5090349012"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.8984,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.73210005,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"29","issue":"13","first_page":"i154","last_page":"i161"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.732222855091095},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6768579483032227},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.6435353755950928},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.5818122625350952},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5707154870033264},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5695421695709229},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.503358781337738},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4765366017818451},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45227155089378357},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4393371641635895},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41397935152053833},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.41353359818458557},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.26895177364349365},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2509622871875763},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11764255166053772}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.732222855091095},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6768579483032227},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.6435353755950928},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.5818122625350952},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5707154870033264},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5695421695709229},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.503358781337738},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4765366017818451},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45227155089378357},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4393371641635895},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41397935152053833},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41353359818458557},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.26895177364349365},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2509622871875763},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11764255166053772},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btt236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt236","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/13/i154/18536046/btt236.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23812979","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23812979","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2688189","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3694667","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3694667","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3694667","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt236","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/13/i154/18536046/btt236.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6700000166893005,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2674840903","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320320006","funder_display_name":"Royal Society"}],"funders":[{"id":"https://openalex.org/F4320320006","display_name":"Royal Society","ror":"https://ror.org/03wnrjx87"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1973743008.pdf","grobid_xml":"https://content.openalex.org/works/W1973743008.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W273955616","https://openalex.org/W1509280691","https://openalex.org/W1644749979","https://openalex.org/W1983202741","https://openalex.org/W1983966050","https://openalex.org/W1987622597","https://openalex.org/W1989277878","https://openalex.org/W1995409416","https://openalex.org/W1996529795","https://openalex.org/W2002574233","https://openalex.org/W2011025549","https://openalex.org/W2012689220","https://openalex.org/W2014286582","https://openalex.org/W2020350008","https://openalex.org/W2023287569","https://openalex.org/W2024704006","https://openalex.org/W2032838501","https://openalex.org/W2047632644","https://openalex.org/W2056735082","https://openalex.org/W2060797027","https://openalex.org/W2063828920","https://openalex.org/W2072013780","https://openalex.org/W2072613143","https://openalex.org/W2078969200","https://openalex.org/W2079531107","https://openalex.org/W2081050097","https://openalex.org/W2092899907","https://openalex.org/W2094491295","https://openalex.org/W2096245011","https://openalex.org/W2098609989","https://openalex.org/W2098824895","https://openalex.org/W2107251251","https://openalex.org/W2108768153","https://openalex.org/W2112463359","https://openalex.org/W2119315087","https://openalex.org/W2119828149","https://openalex.org/W2122576958","https://openalex.org/W2123060905","https://openalex.org/W2124410686","https://openalex.org/W2124967403","https://openalex.org/W2126175129","https://openalex.org/W2127115092","https://openalex.org/W2127872845","https://openalex.org/W2128572161","https://openalex.org/W2128970129","https://openalex.org/W2129877320","https://openalex.org/W2133556195","https://openalex.org/W2139488145","https://openalex.org/W2144856591","https://openalex.org/W2150126975","https://openalex.org/W2156522652","https://openalex.org/W2159482845","https://openalex.org/W2160423401","https://openalex.org/W2165674132","https://openalex.org/W2168330282","https://openalex.org/W2911964244","https://openalex.org/W2951726307","https://openalex.org/W3101308120","https://openalex.org/W3199943451","https://openalex.org/W4294216483","https://openalex.org/W4298226842","https://openalex.org/W6610017368","https://openalex.org/W6630447618","https://openalex.org/W6675757419"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W2251519152","https://openalex.org/W2889302474"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
