{"id":"https://openalex.org/W2100619498","doi":"https://doi.org/10.1093/bioinformatics/btt175","title":"CellH5: a format for data exchange in high-content screening","display_name":"CellH5: a format for data exchange in high-content screening","publication_year":2013,"publication_date":"2013-04-16","ids":{"openalex":"https://openalex.org/W2100619498","doi":"https://doi.org/10.1093/bioinformatics/btt175","mag":"2100619498","pmid":"https://pubmed.ncbi.nlm.nih.gov/23595665"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt175","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt175","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/12/1580/48886085/bioinformatics_29_12_1580.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/12/1580/48886085/bioinformatics_29_12_1580.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101552386","display_name":"Christoph Sommer","orcid":"https://orcid.org/0000-0003-1216-9105"},"institutions":[{"id":"https://openalex.org/I125523173","display_name":"Institute of Molecular Biotechnology","ror":"https://ror.org/01zqrxf85","country_code":"AT","type":"facility","lineage":["https://openalex.org/I125523173","https://openalex.org/I138211613"]},{"id":"https://openalex.org/I138211613","display_name":"Austrian Academy of Sciences","ror":"https://ror.org/03anc3s24","country_code":"AT","type":"government","lineage":["https://openalex.org/I138211613"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["AT","CH","DE"],"is_corresponding":true,"raw_author_name":"Christoph Sommer","raw_affiliation_strings":["1 Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), 1030 Vienna, Austria, 2Institute of Biochemistry, Department of Biology Swiss Federal Institute of Technology (ETH Zurich), 8093 Zurich, Switzerland and 3Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), 1030 Vienna, Austria, 2Institute of Biochemistry, Department of Biology Swiss Federal Institute of Technology (ETH Zurich), 8093 Zurich, Switzerland and 3Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I125523173","https://openalex.org/I138211613","https://openalex.org/I4210138560","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072339215","display_name":"Michael Held","orcid":"https://orcid.org/0000-0003-2604-8048"},"institutions":[{"id":"https://openalex.org/I125523173","display_name":"Institute of Molecular Biotechnology","ror":"https://ror.org/01zqrxf85","country_code":"AT","type":"facility","lineage":["https://openalex.org/I125523173","https://openalex.org/I138211613"]},{"id":"https://openalex.org/I138211613","display_name":"Austrian Academy of Sciences","ror":"https://ror.org/03anc3s24","country_code":"AT","type":"government","lineage":["https://openalex.org/I138211613"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["AT","CH","DE"],"is_corresponding":false,"raw_author_name":"Michael Held","raw_affiliation_strings":["1 Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), 1030 Vienna, Austria, 2Institute of Biochemistry, Department of Biology Swiss Federal Institute of Technology (ETH Zurich), 8093 Zurich, Switzerland and 3Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), 1030 Vienna, Austria, 2Institute of Biochemistry, Department of Biology Swiss Federal Institute of Technology (ETH Zurich), 8093 Zurich, Switzerland and 3Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I125523173","https://openalex.org/I138211613","https://openalex.org/I4210138560","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087826232","display_name":"Bernd Fischer","orcid":"https://orcid.org/0000-0001-9437-2099"},"institutions":[{"id":"https://openalex.org/I125523173","display_name":"Institute of Molecular Biotechnology","ror":"https://ror.org/01zqrxf85","country_code":"AT","type":"facility","lineage":["https://openalex.org/I125523173","https://openalex.org/I138211613"]},{"id":"https://openalex.org/I138211613","display_name":"Austrian Academy of Sciences","ror":"https://ror.org/03anc3s24","country_code":"AT","type":"government","lineage":["https://openalex.org/I138211613"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["AT","CH","DE"],"is_corresponding":false,"raw_author_name":"Bernd Fischer","raw_affiliation_strings":["1 Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), 1030 Vienna, Austria, 2Institute of Biochemistry, Department of Biology Swiss Federal Institute of Technology (ETH Zurich), 8093 Zurich, Switzerland and 3Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), 1030 Vienna, Austria, 2Institute of Biochemistry, Department of Biology Swiss Federal Institute of Technology (ETH Zurich), 8093 Zurich, Switzerland and 3Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I125523173","https://openalex.org/I138211613","https://openalex.org/I4210138560","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029601108","display_name":"Wolfgang Huber","orcid":"https://orcid.org/0000-0002-0474-2218"},"institutions":[{"id":"https://openalex.org/I125523173","display_name":"Institute of Molecular Biotechnology","ror":"https://ror.org/01zqrxf85","country_code":"AT","type":"facility","lineage":["https://openalex.org/I125523173","https://openalex.org/I138211613"]},{"id":"https://openalex.org/I138211613","display_name":"Austrian Academy of Sciences","ror":"https://ror.org/03anc3s24","country_code":"AT","type":"government","lineage":["https://openalex.org/I138211613"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["AT","CH","DE"],"is_corresponding":false,"raw_author_name":"Wolfgang Huber","raw_affiliation_strings":["1 Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), 1030 Vienna, Austria, 2Institute of Biochemistry, Department of Biology Swiss Federal Institute of Technology (ETH Zurich), 8093 Zurich, Switzerland and 3Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), 1030 Vienna, Austria, 2Institute of Biochemistry, Department of Biology Swiss Federal Institute of Technology (ETH Zurich), 8093 Zurich, Switzerland and 3Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I125523173","https://openalex.org/I138211613","https://openalex.org/I4210138560","https://openalex.org/I35440088"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038813172","display_name":"Daniel W. Gerlich","orcid":"https://orcid.org/0000-0003-1637-3365"},"institutions":[{"id":"https://openalex.org/I125523173","display_name":"Institute of Molecular Biotechnology","ror":"https://ror.org/01zqrxf85","country_code":"AT","type":"facility","lineage":["https://openalex.org/I125523173","https://openalex.org/I138211613"]},{"id":"https://openalex.org/I138211613","display_name":"Austrian Academy of Sciences","ror":"https://ror.org/03anc3s24","country_code":"AT","type":"government","lineage":["https://openalex.org/I138211613"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["AT","CH","DE"],"is_corresponding":true,"raw_author_name":"Daniel W. Gerlich","raw_affiliation_strings":["1 Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), 1030 Vienna, Austria, 2Institute of Biochemistry, Department of Biology Swiss Federal Institute of Technology (ETH Zurich), 8093 Zurich, Switzerland and 3Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), 1030 Vienna, Austria, 2Institute of Biochemistry, Department of Biology Swiss Federal Institute of Technology (ETH Zurich), 8093 Zurich, Switzerland and 3Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I125523173","https://openalex.org/I138211613","https://openalex.org/I4210138560","https://openalex.org/I35440088"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5038813172","https://openalex.org/A5101552386"],"corresponding_institution_ids":["https://openalex.org/I125523173","https://openalex.org/I138211613","https://openalex.org/I35440088","https://openalex.org/I4210138560"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.4228,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.89614055,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"29","issue":"12","first_page":"1580","last_page":"1582"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.002099999925121665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8045878410339355},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7713108062744141},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6901959776878357},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.6524877548217773},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.6195465922355652},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6139158010482788},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.5886170864105225},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5619213581085205},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.5185987949371338},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5080749988555908},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4566373825073242},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.42971938848495483},{"id":"https://openalex.org/keywords/data-exchange","display_name":"Data exchange","score":0.4201306700706482},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.41469722986221313},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34201547503471375},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19716167449951172},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17277675867080688}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8045878410339355},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7713108062744141},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6901959776878357},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.6524877548217773},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6195465922355652},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6139158010482788},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.5886170864105225},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5619213581085205},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.5185987949371338},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5080749988555908},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4566373825073242},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.42971938848495483},{"id":"https://openalex.org/C15845906","wikidata":"https://www.wikidata.org/wiki/Q1172338","display_name":"Data exchange","level":2,"score":0.4201306700706482},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.41469722986221313},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34201547503471375},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19716167449951172},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17277675867080688},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006367","descriptor_name":"HeLa Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006367","descriptor_name":"HeLa Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006367","descriptor_name":"HeLa Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btt175","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt175","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/12/1580/48886085/bioinformatics_29_12_1580.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23595665","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23595665","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:doc.rero.ch:292295","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:europepmc.org:2671854","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3673213","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3673213","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3673213","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/68257","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/68257","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 29 (12)","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.3929/ethz-b-000068257","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000068257","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Other"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt175","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt175","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/12/1580/48886085/bioinformatics_29_12_1580.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5299999713897705,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2325242462","display_name":null,"funder_award_id":"EU-FP7","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5566185671","display_name":"Systems microscopy \u2013 a key enabling methodology for next-generation systems biology","funder_award_id":"258068","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8329566861","display_name":"Systems Biology of Mitosis","funder_award_id":"241548","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2100619498.pdf","grobid_xml":"https://content.openalex.org/works/W2100619498.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1842847600","https://openalex.org/W1970480709","https://openalex.org/W2001811698","https://openalex.org/W2031502025","https://openalex.org/W2054927863","https://openalex.org/W2056022845","https://openalex.org/W2107554012","https://openalex.org/W2108980486","https://openalex.org/W2132822444","https://openalex.org/W2139442812","https://openalex.org/W2140099710","https://openalex.org/W2145752049","https://openalex.org/W2160041854","https://openalex.org/W2160697532","https://openalex.org/W2912090453","https://openalex.org/W2914136605","https://openalex.org/W6638918635","https://openalex.org/W6676340742"],"related_works":["https://openalex.org/W2151651283","https://openalex.org/W3118004748","https://openalex.org/W2098339479","https://openalex.org/W4309247532","https://openalex.org/W2792006949","https://openalex.org/W3117086625","https://openalex.org/W2170830174","https://openalex.org/W2164765928","https://openalex.org/W3096946169","https://openalex.org/W2113128227"],"abstract_inverted_index":{"UNLABELLED:":[0],"High-throughput":[1],"microscopy":[2],"data":[3,39,51,76,87],"require":[4],"a":[5,26],"diversity":[6],"of":[7,13,28,69,77],"analytical":[8],"approaches.":[9],"However,":[10],"the":[11,65,70,102,109,115],"construction":[12],"workflows":[14],"that":[15],"use":[16],"algorithms":[17],"from":[18],"different":[19],"software":[20,91],"packages":[21],"is":[22,96],"difficult":[23],"owing":[24],"to":[25],"lack":[27],"interoperability.":[29],"To":[30],"overcome":[31],"this":[32],"limitation,":[33],"we":[34],"present":[35],"CellH5,":[36],"an":[37,59],"HDF5":[38],"format":[40,72],"for":[41,85,124],"cell-based":[42],"assays":[43],"in":[44,56],"high-throughput":[45],"microscopy,":[46],"which":[47],"stores":[48],"high-dimensional":[49],"image":[50,62],"along":[52],"with":[53],"inter-object":[54],"relations":[55],"graphs.":[57],"CellH5Browser,":[58],"interactive":[60],"gallery":[61],"browser,":[63],"demonstrates":[64],"versatility":[66],"and":[67,105,114],"performance":[68],"file":[71],"on":[73],"live":[74],"imaging":[75],"dividing":[78],"human":[79],"cells.":[80],"CellH5":[81],"provides":[82],"new":[83],"opportunities":[84],"integrated":[86],"analysis":[88],"by":[89],"multiple":[90],"platforms.":[92],"AVAILABILITY:":[93],"Source":[94],"code":[95],"freely":[97],"available":[98,118],"at":[99,106,119],"www.github.com/cellh5":[100],"under":[101,108],"GPL":[103],"license":[104],"www.bioconductor.org/packages/release/bioc/html/rhdf5.html":[107],"Artistic-2.0":[110],"license.":[111],"Demo":[112],"datasets":[113],"CellH5Browser":[116],"are":[117],"www.cellh5.org.":[120],"A":[121],"Fiji":[122],"importer":[123],"cellh5":[125],"will":[126],"be":[127],"released":[128],"soon.":[129]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}