{"id":"https://openalex.org/W2166153887","doi":"https://doi.org/10.1093/bioinformatics/btt171","title":"Exome-based analysis for RNA epigenome sequencing data","display_name":"Exome-based analysis for RNA epigenome sequencing data","publication_year":2013,"publication_date":"2013-04-14","ids":{"openalex":"https://openalex.org/W2166153887","doi":"https://doi.org/10.1093/bioinformatics/btt171","mag":"2166153887","pmid":"https://pubmed.ncbi.nlm.nih.gov/23589649"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt171","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt171","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/12/1565/48886075/bioinformatics_29_12_1565.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/12/1565/48886075/bioinformatics_29_12_1565.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062986831","display_name":"Jia Meng","orcid":"https://orcid.org/0000-0003-3455-205X"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jia Meng","raw_affiliation_strings":["1 Picower Institute for Learning and Memory, 2Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, 3Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, MA 02139, 4Department of Electrical and Computer Engineering, University of Texas at San Antonio, San, Antonio, TX 78249, 5Department of Cellular & Structural Biology, 6Greehey Children\u2019s Cancer Research Institute and 7Department of Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Picower Institute for Learning and Memory, 2Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, 3Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, MA 02139, 4Department of Electrical and Computer Engineering, University of Texas at San Antonio, San, Antonio, TX 78249, 5Department of Cellular & Structural Biology, 6Greehey Children\u2019s Cancer Research Institute and 7Department of Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102014287","display_name":"Xiaodong Cui","orcid":"https://orcid.org/0000-0001-5023-4890"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaodong Cui","raw_affiliation_strings":["1 Picower Institute for Learning and Memory, 2Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, 3Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, MA 02139, 4Department of Electrical and Computer Engineering, University of Texas at San Antonio, San, Antonio, TX 78249, 5Department of Cellular & Structural Biology, 6Greehey Children\u2019s Cancer Research Institute and 7Department of Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Picower Institute for Learning and Memory, 2Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, 3Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, MA 02139, 4Department of Electrical and Computer Engineering, University of Texas at San Antonio, San, Antonio, TX 78249, 5Department of Cellular & Structural Biology, 6Greehey Children\u2019s Cancer Research Institute and 7Department of Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060628869","display_name":"Manjeet K. Rao","orcid":"https://orcid.org/0000-0001-7573-2677"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manjeet K. Rao","raw_affiliation_strings":["1 Picower Institute for Learning and Memory, 2Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, 3Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, MA 02139, 4Department of Electrical and Computer Engineering, University of Texas at San Antonio, San, Antonio, TX 78249, 5Department of Cellular & Structural Biology, 6Greehey Children\u2019s Cancer Research Institute and 7Department of Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Picower Institute for Learning and Memory, 2Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, 3Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, MA 02139, 4Department of Electrical and Computer Engineering, University of Texas at San Antonio, San, Antonio, TX 78249, 5Department of Cellular & Structural Biology, 6Greehey Children\u2019s Cancer Research Institute and 7Department of Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100689057","display_name":"Yidong Chen","orcid":"https://orcid.org/0000-0001-6806-2185"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yidong Chen","raw_affiliation_strings":["1 Picower Institute for Learning and Memory, 2Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, 3Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, MA 02139, 4Department of Electrical and Computer Engineering, University of Texas at San Antonio, San, Antonio, TX 78249, 5Department of Cellular & Structural Biology, 6Greehey Children\u2019s Cancer Research Institute and 7Department of Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Picower Institute for Learning and Memory, 2Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, 3Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, MA 02139, 4Department of Electrical and Computer Engineering, University of Texas at San Antonio, San, Antonio, TX 78249, 5Department of Cellular & Structural Biology, 6Greehey Children\u2019s Cancer Research Institute and 7Department of Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966","https://openalex.org/I63966007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068887242","display_name":"Yufei Huang","orcid":"https://orcid.org/0000-0001-6268-5357"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yufei Huang","raw_affiliation_strings":["1 Picower Institute for Learning and Memory, 2Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, 3Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, MA 02139, 4Department of Electrical and Computer Engineering, University of Texas at San Antonio, San, Antonio, TX 78249, 5Department of Cellular & Structural Biology, 6Greehey Children\u2019s Cancer Research Institute and 7Department of Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Picower Institute for Learning and Memory, 2Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, 3Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, MA 02139, 4Department of Electrical and Computer Engineering, University of Texas at San Antonio, San, Antonio, TX 78249, 5Department of Cellular & Structural Biology, 6Greehey Children\u2019s Cancer Research Institute and 7Department of Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966","https://openalex.org/I63966007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5062986831","https://openalex.org/A5068887242"],"corresponding_institution_ids":["https://openalex.org/I165951966","https://openalex.org/I63966007"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.6549,"has_fulltext":true,"cited_by_count":206,"citation_normalized_percentile":{"value":0.90492368,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"29","issue":"12","first_page":"1565","last_page":"1567"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9557999968528748,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9557999968528748,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.027000000700354576,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.005200000014156103,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epigenome","display_name":"Epigenome","score":0.8006096482276917},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6333743929862976},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5633409023284912},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5560431480407715},{"id":"https://openalex.org/keywords/exome","display_name":"Exome","score":0.5148236155509949},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.47437888383865356},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.43813878297805786},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.43673887848854065},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42803773283958435},{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.38084307312965393},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30527061223983765},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20380735397338867},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.15620657801628113},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.13955125212669373},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1042429506778717}],"concepts":[{"id":"https://openalex.org/C117717151","wikidata":"https://www.wikidata.org/wiki/Q3589155","display_name":"Epigenome","level":5,"score":0.8006096482276917},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6333743929862976},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5633409023284912},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5560431480407715},{"id":"https://openalex.org/C10590036","wikidata":"https://www.wikidata.org/wiki/Q417664","display_name":"Exome","level":5,"score":0.5148236155509949},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.47437888383865356},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.43813878297805786},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.43673887848854065},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42803773283958435},{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.38084307312965393},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30527061223983765},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20380735397338867},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.15620657801628113},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.13955125212669373},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1042429506778717},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D047468","descriptor_name":"Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047468","descriptor_name":"Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047468","descriptor_name":"Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057809","descriptor_name":"HEK293 Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057809","descriptor_name":"HEK293 Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057809","descriptor_name":"HEK293 Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt171","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt171","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/12/1565/48886075/bioinformatics_29_12_1565.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23589649","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23589649","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3029505","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3673212","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt171","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt171","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/12/1565/48886075/bioinformatics_29_12_1565.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2131647913","display_name":null,"funder_award_id":"5G12RR013646-12","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G2257784365","display_name":null,"funder_award_id":"CCF-0546345","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4228000389","display_name":null,"funder_award_id":"P30CA54174","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5500877088","display_name":null,"funder_award_id":"09-874-3-235","funder_id":"https://openalex.org/F4320332753","funder_display_name":"Qatar National Research Fund"},{"id":"https://openalex.org/G6779040882","display_name":null,"funder_award_id":"09-874-3-235","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6887440415","display_name":null,"funder_award_id":"5G12RR013646","funder_id":"https://openalex.org/F4320310677","funder_display_name":"University of Texas at San Antonio"},{"id":"https://openalex.org/G6911913425","display_name":null,"funder_award_id":"P30CA54174","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G874332849","display_name":"CAREER: Bayesian Signal Processing for Uncovering Gene Regulatory Networks","funder_award_id":"0546345","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310677","display_name":"University of Texas at San Antonio","ror":"https://ror.org/01kd65564"},{"id":"https://openalex.org/F4320321038","display_name":"Fonds National de la Recherche Luxembourg","ror":"https://ror.org/039z13y21"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332753","display_name":"Qatar National Research Fund","ror":"https://ror.org/01svaqq28"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2166153887.pdf","grobid_xml":"https://content.openalex.org/works/W2166153887.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1964963969","https://openalex.org/W1974225991","https://openalex.org/W2011400542","https://openalex.org/W2021341670","https://openalex.org/W2044164623","https://openalex.org/W2045443950","https://openalex.org/W2046137036","https://openalex.org/W2052770715","https://openalex.org/W2053758959","https://openalex.org/W2055770801","https://openalex.org/W2065847836","https://openalex.org/W2070030982","https://openalex.org/W2078964320","https://openalex.org/W2097065948","https://openalex.org/W2102904139","https://openalex.org/W2108234281","https://openalex.org/W2111778812","https://openalex.org/W2134087142","https://openalex.org/W2166810745","https://openalex.org/W2167616678","https://openalex.org/W2171808845","https://openalex.org/W4237941089","https://openalex.org/W6819552753"],"related_works":["https://openalex.org/W2093932542","https://openalex.org/W2043256480","https://openalex.org/W2772505697","https://openalex.org/W3083501552","https://openalex.org/W2400191746","https://openalex.org/W2094815267","https://openalex.org/W1983406990","https://openalex.org/W2484239316","https://openalex.org/W3024198590","https://openalex.org/W4367844067"],"abstract_inverted_index":{"MOTIVATION:":[0],"Fragmented":[1],"RNA":[2,6,13,40,95],"immunoprecipitation":[3],"combined":[4],"with":[5,44,81],"sequencing":[7,42],"enabled":[8],"the":[9,37,54,93,99],"unbiased":[10],"study":[11],"of":[12,23,27,39,57],"epigenome":[14,41],"at":[15,111],"a":[16,69,82],"near":[17],"single-base":[18],"resolution;":[19],"however,":[20],"unique":[21],"features":[22],"this":[24,58],"new":[25,59],"type":[26],"data":[28,43,47,60,71],"call":[29],"for":[30,88],"novel":[31,70],"computational":[32,63],"techniques.":[33],"RESULT:":[34],"Through":[35],"examining":[36],"connections":[38],"two":[45],"well-studied":[46],"types,":[48],"ChIP-Seq":[49],"and":[50,68,91,106],"RNA-Seq,":[51],"we":[52],"unveiled":[53],"salient":[55],"characteristics":[56],"type.":[61],"The":[62,102],"strategies":[64],"were":[65],"discussed":[66],"accordingly,":[67],"processing":[72],"pipeline":[73],"was":[74],"proposed":[75],"that":[76],"combines":[77],"several":[78],"existing":[79],"tools":[80],"newly":[83],"developed":[84],"exome-based":[85],"approach":[86],"'exomePeak'":[87,105],"detecting,":[89],"representing":[90],"visualizing":[92],"post-transcriptional":[94],"modification":[96],"sites":[97],"on":[98],"transcriptome.":[100],"AVAILABILITY:":[101],"MATLAB":[103],"package":[104],"additional":[107],"details":[108],"are":[109],"available":[110],"http://compgenomics.utsa.edu/exomePeak/.":[112]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":30},{"year":2023,"cited_by_count":23},{"year":2022,"cited_by_count":29},{"year":2021,"cited_by_count":31},{"year":2020,"cited_by_count":24},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":3}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}