{"id":"https://openalex.org/W2121585396","doi":"https://doi.org/10.1093/bioinformatics/btt149","title":"Density-based hierarchical clustering of pyro-sequences on a large scale\u2014the case of fungal ITS1","display_name":"Density-based hierarchical clustering of pyro-sequences on a large scale\u2014the case of fungal ITS1","publication_year":2013,"publication_date":"2013-03-28","ids":{"openalex":"https://openalex.org/W2121585396","doi":"https://doi.org/10.1093/bioinformatics/btt149","mag":"2121585396","pmid":"https://pubmed.ncbi.nlm.nih.gov/23539304"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt149","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt149","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/10/1268/48886134/bioinformatics_29_10_1268.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/10/1268/48886134/bioinformatics_29_10_1268.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006006798","display_name":"Marco Pagni","orcid":"https://orcid.org/0000-0001-9292-9463"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I2252230247","display_name":"Institute for Work and Health","ror":"https://ror.org/02rycsd19","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2252230247"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Marco Pagni","raw_affiliation_strings":["1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I2252230247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071856461","display_name":"H\u00e9l\u00e8ne Niculita\u2010Hirzel","orcid":"https://orcid.org/0000-0003-1467-8819"},"institutions":[{"id":"https://openalex.org/I2252230247","display_name":"Institute for Work and Health","ror":"https://ror.org/02rycsd19","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2252230247"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"H\u00e9l\u00e8ne Niculita-Hirzel","raw_affiliation_strings":["1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I2252230247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064694326","display_name":"Lo\u00efc Pellissier","orcid":"https://orcid.org/0000-0002-2289-8259"},"institutions":[{"id":"https://openalex.org/I2252230247","display_name":"Institute for Work and Health","ror":"https://ror.org/02rycsd19","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2252230247"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Lo\u00efc Pellissier","raw_affiliation_strings":["1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I2252230247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110053125","display_name":"Anne Dubuis","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]},{"id":"https://openalex.org/I2252230247","display_name":"Institute for Work and Health","ror":"https://ror.org/02rycsd19","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2252230247"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Anne Dubuis","raw_affiliation_strings":["1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I2252230247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065825020","display_name":"Ioannis X\u00e9narios","orcid":"https://orcid.org/0000-0002-3413-6841"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I2252230247","display_name":"Institute for Work and Health","ror":"https://ror.org/02rycsd19","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2252230247"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ioannis Xenarios","raw_affiliation_strings":["1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I2252230247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041324397","display_name":"Antoine Guisan","orcid":"https://orcid.org/0000-0002-3998-4815"},"institutions":[{"id":"https://openalex.org/I2252230247","display_name":"Institute for Work and Health","ror":"https://ror.org/02rycsd19","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2252230247"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Antoine Guisan","raw_affiliation_strings":["1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I2252230247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022038254","display_name":"Ian R. Sanders","orcid":"https://orcid.org/0000-0002-9591-8214"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]},{"id":"https://openalex.org/I2252230247","display_name":"Institute for Work and Health","ror":"https://ror.org/02rycsd19","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2252230247"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ian R. Sanders","raw_affiliation_strings":["1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I2252230247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024304834","display_name":"J\u00e9r\u00f4me Goudet","orcid":"https://orcid.org/0000-0002-5318-7601"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I2252230247","display_name":"Institute for Work and Health","ror":"https://ror.org/02rycsd19","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2252230247"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"J\u00e9r\u00f4me Goudet","raw_affiliation_strings":["1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I2252230247"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054186469","display_name":"Nicolas Guex","orcid":"https://orcid.org/0000-0001-6023-0519"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I2252230247","display_name":"Institute for Work and Health","ror":"https://ror.org/02rycsd19","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2252230247"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nicolas Guex","raw_affiliation_strings":["1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, 2Occupational Environment Department, Institute for Work and Health, Universities of Lausanne and Geneva, 1066 Lausanne, Switzerland and 3Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I2252230247"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5006006798"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I2252230247","https://openalex.org/I97565354"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.0471,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.76964564,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"29","issue":"10","first_page":"1268","last_page":"1274"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.1665000021457672,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.1665000021457672,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12668","display_name":"Yeasts and Rust Fungi Studies","score":0.12880000472068787,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11528","display_name":"Lichen and fungal ecology","score":0.0771000012755394,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.9101714491844177},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7640438079833984},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.7388006448745728},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.6769699454307556},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6624331474304199},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5168029069900513},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4708796441555023},{"id":"https://openalex.org/keywords/file-transfer-protocol","display_name":"File Transfer Protocol","score":0.4354630708694458},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34277260303497314},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2440488338470459},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18386811017990112},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14759263396263123},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12059193849563599}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.9101714491844177},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7640438079833984},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.7388006448745728},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.6769699454307556},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6624331474304199},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5168029069900513},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4708796441555023},{"id":"https://openalex.org/C169485995","wikidata":"https://www.wikidata.org/wiki/Q42283","display_name":"File Transfer Protocol","level":3,"score":0.4354630708694458},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34277260303497314},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2440488338470459},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18386811017990112},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14759263396263123},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12059193849563599},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004271","descriptor_name":"DNA, Fungal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004271","descriptor_name":"DNA, Fungal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004271","descriptor_name":"DNA, Fungal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021903","descriptor_name":"DNA, Ribosomal Spacer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021903","descriptor_name":"DNA, Ribosomal Spacer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021903","descriptor_name":"DNA, Ribosomal Spacer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btt149","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt149","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/10/1268/48886134/bioinformatics_29_10_1268.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23539304","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23539304","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_AA89A39C702D","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_AA89A39C702D","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics, vol. 29, no. 10, pp. 1268-1274","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:iris.unil.ch:iris/221792","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/221792","pdf_url":"https://iris.unil.ch/bitstreams/70349f78-6ad8-4eb4-87f6-dadb73ce63d7/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:europepmc.org:2653730","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3654712","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt149","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt149","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/10/1268/48886134/bioinformatics_29_10_1268.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.550000011920929,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G14402661","display_name":"Assessing the importance of biotic interactions for predicting the impact of climate change on the future distribution of plant assemblages (BIOASSEMBLE)","funder_award_id":"125145","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G3907294353","display_name":"Impact of agroecosystem disturbance on soil fungal community structure, consequences on occupational airborne exposure to fungi and mycotoxins","funder_award_id":"129027","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G4608929042","display_name":null,"funder_award_id":"PMPDP3-129027","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G544591541","display_name":null,"funder_award_id":"31003A","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G7885382381","display_name":null,"funder_award_id":"31003A-125145","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G790919450","display_name":null,"funder_award_id":"31003A-125145","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320323831","display_name":"Universit\u00e9 de Lausanne","ror":"https://ror.org/019whta54"},{"id":"https://openalex.org/F4320331322","display_name":"Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2121585396.pdf","grobid_xml":"https://content.openalex.org/works/W2121585396.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1969451865","https://openalex.org/W1996423252","https://openalex.org/W2000072710","https://openalex.org/W2042673280","https://openalex.org/W2067752346","https://openalex.org/W2081293291","https://openalex.org/W2097769208","https://openalex.org/W2108166985","https://openalex.org/W2124351063","https://openalex.org/W2127648442","https://openalex.org/W2130077037","https://openalex.org/W2130208436","https://openalex.org/W2136879569","https://openalex.org/W2140264006","https://openalex.org/W2140638310","https://openalex.org/W2160378127","https://openalex.org/W3099839986","https://openalex.org/W4235169531","https://openalex.org/W6670861413"],"related_works":["https://openalex.org/W2592952084","https://openalex.org/W3216028647","https://openalex.org/W4386246753","https://openalex.org/W2032933424","https://openalex.org/W4229003453","https://openalex.org/W2020701082","https://openalex.org/W3197105638","https://openalex.org/W188786151","https://openalex.org/W3192757256","https://openalex.org/W2165213086"],"abstract_inverted_index":{"MOTIVATION:":[0],"Analysis":[1],"of":[2,4,15,22,30,66,113,141,165],"millions":[3],"pyro-sequences":[5],"is":[6,25,147,156],"currently":[7],"playing":[8],"a":[9,91,163,175],"crucial":[10],"role":[11],"in":[12],"the":[13,28,42,100,109,118,132,139,142],"advance":[14],"environmental":[16],"microbiology.":[17],"Taxonomy-independent,":[18],"i.e.":[19],"unsupervised,":[20],"clustering":[21],"these":[23,114],"sequences":[24,65,74],"essential":[26],"for":[27,150],"definition":[29],"Operational":[31],"Taxonomic":[32],"Units.":[33],"For":[34],"this":[35],"application,":[36],"reproducibility":[37,110],"and":[38,89,111],"robustness":[39,112],"should":[40],"be":[41],"most":[43,119],"sought":[44],"after":[45],"qualities,":[46],"but":[47],"have":[48,69],"thus":[49],"far":[50],"largely":[51],"been":[52,70],"overlooked.":[53],"RESULTS:":[54],"More":[55],"than":[56],"1":[57,63],"million":[58],"hyper-variable":[59],"internal":[60],"transcribed":[61],"spacer":[62],"(ITS1)":[64],"fungal":[67],"origin":[68],"analyzed.":[71],"The":[72],"ITS1":[73],"were":[75,96],"first":[76],"properly":[77],"extracted":[78],"from":[79],"454":[80],"reads":[81],"using":[82],"generalized":[83],"profiles.":[84],"Then,":[85],"otupipe,":[86],"cd-hit-454,":[87],"ESPRIT-Tree":[88],"DBC454,":[90],"new":[92],"algorithm":[93],"presented":[94],"here,":[95],"used":[97],"to":[98,107,158],"analyze":[99],"sequences.":[101],"A":[102],"numerical":[103],"assay":[104],"was":[105,117],"developed":[106],"measure":[108],"algorithms.":[115],"DBC454":[116,125],"robust,":[120],"closely":[121],"followed":[122],"by":[123,135],"ESPRIT-Tree.":[124],"features":[126],"density-based":[127],"hierarchical":[128],"clustering,":[129],"which":[130],"complements":[131],"other":[133],"methods":[134],"providing":[136],"insights":[137],"into":[138],"structure":[140],"data.":[143],"AVAILABILITY:":[144],"An":[145],"executable":[146],"freely":[148],"available":[149],"non-commercial":[151],"users":[152],"at":[153],"ftp://ftp.vital-it.ch/tools/dbc454.":[154],"It":[155],"designed":[157],"run":[159],"under":[160],"MPI":[161],"on":[162,174],"cluster":[164],"64-bit":[166],"Linux":[167],"machines":[168],"running":[169],"Red":[170],"Hat":[171],"4.x,":[172],"or":[173,181],"multi-core":[176],"OSX":[177],"system.":[178],"CONTACT:":[179],"dbc454@vital-it.ch":[180],"nicolas.guex@isb-sib.ch.":[182]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
