{"id":"https://openalex.org/W2131563181","doi":"https://doi.org/10.1093/bioinformatics/btt141","title":"A self-updating road map of The Cancer Genome Atlas","display_name":"A self-updating road map of The Cancer Genome Atlas","publication_year":2013,"publication_date":"2013-04-17","ids":{"openalex":"https://openalex.org/W2131563181","doi":"https://doi.org/10.1093/bioinformatics/btt141","mag":"2131563181","pmid":"https://pubmed.ncbi.nlm.nih.gov/23595662"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt141","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt141","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/10/1333/48886164/bioinformatics_29_10_1333.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/10/1333/48886164/bioinformatics_29_10_1333.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040044900","display_name":"David E. Robbins","orcid":null},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["IE","US"],"is_corresponding":true,"raw_author_name":"David E. Robbins","raw_affiliation_strings":["1 Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL 35233-7331, USA, 2Department of Electrical and Computer Engineering, University of Alabama at Birmingham, Birmingham, AL 35249, USA and 3Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL 35233-7331, USA, 2Department of Electrical and Computer Engineering, University of Alabama at Birmingham, Birmingham, AL 35249, USA and 3Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350","https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037169281","display_name":"Alexander Gr\u00fcneberg","orcid":null},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["IE","US"],"is_corresponding":false,"raw_author_name":"Alexander Gr\u00fcneberg","raw_affiliation_strings":["1 Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL 35233-7331, USA, 2Department of Electrical and Computer Engineering, University of Alabama at Birmingham, Birmingham, AL 35249, USA and 3Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL 35233-7331, USA, 2Department of Electrical and Computer Engineering, University of Alabama at Birmingham, Birmingham, AL 35249, USA and 3Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350","https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086141196","display_name":"Helena Deus","orcid":"https://orcid.org/0000-0003-2995-568X"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["IE","US"],"is_corresponding":false,"raw_author_name":"Helena F. Deus","raw_affiliation_strings":["1 Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL 35233-7331, USA, 2Department of Electrical and Computer Engineering, University of Alabama at Birmingham, Birmingham, AL 35249, USA and 3Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL 35233-7331, USA, 2Department of Electrical and Computer Engineering, University of Alabama at Birmingham, Birmingham, AL 35249, USA and 3Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350","https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000615009","display_name":"Murat M. Tanik","orcid":"https://orcid.org/0000-0002-3116-7095"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["IE","US"],"is_corresponding":false,"raw_author_name":"Murat M. Tanik","raw_affiliation_strings":["1 Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL 35233-7331, USA, 2Department of Electrical and Computer Engineering, University of Alabama at Birmingham, Birmingham, AL 35249, USA and 3Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL 35233-7331, USA, 2Department of Electrical and Computer Engineering, University of Alabama at Birmingham, Birmingham, AL 35249, USA and 3Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350","https://openalex.org/I32389192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012322429","display_name":"Jonas S. Almeida","orcid":"https://orcid.org/0000-0002-7883-7922"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["IE","US"],"is_corresponding":false,"raw_author_name":"Jonas S. Almeida","raw_affiliation_strings":["1 Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL 35233-7331, USA, 2Department of Electrical and Computer Engineering, University of Alabama at Birmingham, Birmingham, AL 35249, USA and 3Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL 35233-7331, USA, 2Department of Electrical and Computer Engineering, University of Alabama at Birmingham, Birmingham, AL 35249, USA and 3Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350","https://openalex.org/I32389192"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5040044900"],"corresponding_institution_ids":["https://openalex.org/I188760350","https://openalex.org/I32389192"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.7515,"has_fulltext":false,"cited_by_count":35,"citation_normalized_percentile":{"value":0.90924591,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"29","issue":"10","first_page":"1333","last_page":"1340"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.794325590133667},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.7901524901390076},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6720746755599976},{"id":"https://openalex.org/keywords/directory","display_name":"Directory","score":0.5719662308692932},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5651021003723145},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5431458353996277},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.4831518530845642},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39346423745155334},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.32998016476631165}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.794325590133667},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.7901524901390076},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6720746755599976},{"id":"https://openalex.org/C2777683733","wikidata":"https://www.wikidata.org/wiki/Q201456","display_name":"Directory","level":2,"score":0.5719662308692932},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5651021003723145},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5431458353996277},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.4831518530845642},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39346423745155334},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.32998016476631165},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btt141","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt141","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/10/1333/48886164/bioinformatics_29_10_1333.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"mag:23595662","is_oa":false,"landing_page_url":"https://agriknowledge.affrc.go.jp/RN/2010652205.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306544738","display_name":"\u5317\u6d77\u9053\u7acb\u8fb2\u696d\u8a66\u9a13\u5834\u96c6\u5831","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"\u5317\u6d77\u9053\u7acb\u8fb2\u696d\u8a66\u9a13\u5834\u96c6\u5831","raw_type":null},{"id":"pmid:23595662","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23595662","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:http://www.rian.ie/159565/","is_oa":false,"landing_page_url":"http://hdl.handle.net/10379/13663","pdf_url":null,"source":{"id":"https://openalex.org/S4306400033","display_name":"Arrow@dit (Dublin Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I115570527","host_organization_name":"Dublin Institute of Technology","host_organization_lineage":["https://openalex.org/I115570527"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:europepmc.org:2653728","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3654710","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt141","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt141","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/10/1333/48886164/bioinformatics_29_10_1333.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3144121387","display_name":null,"funder_award_id":"5UL1 RR025777-03","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G4077954923","display_name":null,"funder_award_id":"UL1 RR025777","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G4187616326","display_name":null,"funder_award_id":"U24 CA143883","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6372552650","display_name":null,"funder_award_id":"UL1 TR000165","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131563181.pdf"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W190927549","https://openalex.org/W1430534423","https://openalex.org/W1486294873","https://openalex.org/W1977069051","https://openalex.org/W1978210737","https://openalex.org/W2005895632","https://openalex.org/W2017000695","https://openalex.org/W2025183726","https://openalex.org/W2027378283","https://openalex.org/W2062926086","https://openalex.org/W2075782148","https://openalex.org/W2104601239","https://openalex.org/W2111588838","https://openalex.org/W2118527670","https://openalex.org/W2120584764","https://openalex.org/W2123696077","https://openalex.org/W2135415614","https://openalex.org/W2141719485","https://openalex.org/W2146839916","https://openalex.org/W2148200511","https://openalex.org/W2149441684","https://openalex.org/W2164189017","https://openalex.org/W2170012470","https://openalex.org/W2173213060","https://openalex.org/W2186283613","https://openalex.org/W2612416799","https://openalex.org/W2912486915","https://openalex.org/W4300012252"],"related_works":["https://openalex.org/W2615202182","https://openalex.org/W4206665951","https://openalex.org/W2529794967","https://openalex.org/W2904139343","https://openalex.org/W2604011835","https://openalex.org/W3139465322","https://openalex.org/W2484233589","https://openalex.org/W2528203718","https://openalex.org/W4241483715","https://openalex.org/W4243630814"],"abstract_inverted_index":{"MOTIVATION:":[0],"Since":[1],"2011,":[2],"The":[3,174,224],"Cancer":[4],"Genome":[5],"Atlas'":[6],"(TCGA)":[7],"files":[8,63,111,167],"have":[9],"been":[10],"accessible":[11],"through":[12],"HTTP":[13,172],"from":[14,273],"a":[15,57,72,76,220,270,285,310],"public":[16,247],"site,":[17],"creating":[18],"entirely":[19],"new":[20],"possibilities":[21],"for":[22,161,249],"cancer":[23,94],"informatics":[24],"by":[25],"enhancing":[26],"data":[27,78,110,241,252,298],"discovery":[28,190],"and":[29,46,85,125,156,182,211,254,268,289,309],"retrieval.":[30],"Significantly,":[31],"these":[32,206],"enhancements":[33],"enable":[34],"the":[35,65,83,92,107,127,146,158,169,209,227,263,293],"reporting":[36],"of":[37,62,70,87,91,103,109,166,191,194,213,219,226,265,297],"analysis":[38],"results":[39,215],"that":[40],"can":[41],"be":[42,178,244],"fully":[43],"traced":[44],"to":[45,53,82,123,163,233,292,306],"reproduced":[47],"using":[48,180,200],"their":[49,198],"source":[50,307],"data.":[51],"However,":[52],"realize":[54],"this":[55,88,139],"possibility,":[56],"continually":[58],"updated":[59],"road":[60,73],"map":[61,74],"in":[64,98,143,168,276],"TCGA":[66,128,170,228],"is":[67,96,313,320],"required.":[68],"Creation":[69],"such":[71,279],"represents":[75],"significant":[77],"modeling":[79],"challenge,":[80],"due":[81],"size":[84],"fluidity":[86],"resource:":[89],"each":[90],"33":[93],"types":[95],"instantiated":[97],"only":[99],"partially":[100],"overlapping":[101],"sets":[102],"analytical":[104],"platforms,":[105],"while":[106],"number":[108],"available":[112,314,321],"doubles":[113],"approximately":[114],"every":[115],"7":[116],"months.":[117],"RESULTS:":[118],"We":[119],"developed":[120],"an":[121],"engine":[122,140,230],"index":[124,176],"annotate":[126],"files,":[129,195],"relying":[130],"exclusively":[131],"on":[132,197],"third-generation":[133],"web":[134,201],"technologies":[135],"(Web":[136],"3.0).":[137],"Specifically,":[138],"uses":[141],"JavaScript":[142],"conjunction":[144],"with":[145,262],"World":[147],"Wide":[148],"Web":[149],"Consortium's":[150],"(W3C)":[151],"Resource":[152],"Description":[153],"Framework":[154],"(RDF),":[155],"SPARQL,":[157,181],"query":[159],"language":[160],"RDF,":[162],"capture":[164],"metadata":[165],"open-access":[171],"directory.":[173],"resulting":[175],"may":[177],"queried":[179],"enables":[183],"file-level":[184],"provenance":[185],"annotations":[186],"as":[187,189,217,246,280],"well":[188],"arbitrary":[192],"subsets":[193],"based":[196],"metadata,":[199],"standard":[202],"languages.":[203],"In":[204],"turn,":[205],"abilities":[207],"enhance":[208],"reproducibility":[210],"distribution":[212],"novel":[214],"delivered":[216],"elements":[218,260],"web-based":[221],"computational":[222],"ecosystem.":[223],"development":[225],"Roadmap":[229],"was":[231],"found":[232],"provide":[234],"specific":[235,258],"clues":[236],"about":[237],"how":[238],"biomedical":[239],"big":[240],"initiatives":[242,278],"should":[243],"exposed":[245],"resources":[248],"exploratory":[250],"analysis,":[251],"mining":[253],"reproducible":[255,290],"research.":[256],"These":[257],"design":[259],"align":[261],"concept":[264],"knowledge":[266],"reengineering":[267],"represent":[269],"sharp":[271],"departure":[272],"top-down":[274],"approaches":[275],"grid":[277],"CaBIG.":[281],"They":[282],"also":[283],"present":[284],"much":[286],"more":[287],"interoperable":[288],"alternative":[291],"still":[294],"pervasive":[295],"use":[296],"portals.":[299],"AVAILABILITY:":[300],"A":[301,317],"prepared":[302],"dashboard,":[303],"including":[304],"links":[305],"code":[308],"SPARQL":[311],"endpoint,":[312],"at":[315,322],"http://bit.ly/TCGARoadmap.":[316],"video":[318],"tutorial":[319],"http://bit.ly/TCGARoadmapTutorial.":[323],"CONTACT:":[324],"robbinsd@uab.edu.":[325]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
