{"id":"https://openalex.org/W2132137848","doi":"https://doi.org/10.1093/bioinformatics/btt115","title":"Galaxy LIMS for next-generation sequencing","display_name":"Galaxy LIMS for next-generation sequencing","publication_year":2013,"publication_date":"2013-03-11","ids":{"openalex":"https://openalex.org/W2132137848","doi":"https://doi.org/10.1093/bioinformatics/btt115","mag":"2132137848","pmid":"https://pubmed.ncbi.nlm.nih.gov/23479349"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt115","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt115","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/9/1233/48901514/bioinformatics_29_9_1233.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/9/1233/48901514/bioinformatics_29_9_1233.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081693176","display_name":"Jelle Scholtalbers","orcid":"https://orcid.org/0000-0002-6090-2482"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jelle Scholtalbers","raw_affiliation_strings":["Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067203874","display_name":"Jasmin R\u00f6\u00dfler","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jasmin R\u00f6\u00dfler","raw_affiliation_strings":["Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014590973","display_name":"Patrick Sorn","orcid":"https://orcid.org/0000-0001-6179-3014"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Patrick Sorn","raw_affiliation_strings":["Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111794450","display_name":"Jos de Graaf","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jos de Graaf","raw_affiliation_strings":["Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011007598","display_name":"Valesca Boisgu\u00e9rin","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Valesca Boisgu\u00e9rin","raw_affiliation_strings":["Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079846160","display_name":"John C. Castle","orcid":"https://orcid.org/0000-0002-6017-7794"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"John Castle","raw_affiliation_strings":["Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075617216","display_name":"U\u011fur \u015eahin","orcid":"https://orcid.org/0000-0003-0363-1564"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ugur Sahin","raw_affiliation_strings":["Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5081693176"],"corresponding_institution_ids":["https://openalex.org/I197323543"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":19.1255,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.99038929,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"29","issue":"9","first_page":"1233","last_page":"1234"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9732999801635742,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7251685857772827},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.7012421488761902},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.599590003490448},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.5524972677230835},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4812309741973877},{"id":"https://openalex.org/keywords/message-queue","display_name":"Message queue","score":0.45888906717300415},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34277456998825073},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.280639111995697},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2794041335582733}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7251685857772827},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.7012421488761902},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.599590003490448},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5524972677230835},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4812309741973877},{"id":"https://openalex.org/C26324664","wikidata":"https://www.wikidata.org/wiki/Q1065525","display_name":"Message queue","level":2,"score":0.45888906717300415},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34277456998825073},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.280639111995697},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2794041335582733},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt115","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt115","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/9/1233/48901514/bioinformatics_29_9_1233.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23479349","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23479349","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repository.ubn.ru.nl:2066/118462","is_oa":false,"landing_page_url":"http://hdl.handle.net/2066/118462","pdf_url":null,"source":{"id":"https://openalex.org/S4306401067","display_name":"Radboud Repository (Radboud University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I145872427","host_organization_name":"Radboud University Nijmegen","host_organization_lineage":["https://openalex.org/I145872427"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article / Letter to editor"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt115","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt115","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/9/1233/48901514/bioinformatics_29_9_1233.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132137848.pdf","grobid_xml":"https://content.openalex.org/works/W2132137848.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1583240815","https://openalex.org/W2091708614","https://openalex.org/W2122344857","https://openalex.org/W2136482257","https://openalex.org/W2161645441","https://openalex.org/W6634936471"],"related_works":["https://openalex.org/W2618286804","https://openalex.org/W2944823289","https://openalex.org/W2329643025","https://openalex.org/W3037018281","https://openalex.org/W2972592048","https://openalex.org/W2358319515","https://openalex.org/W3131163342","https://openalex.org/W4321854979","https://openalex.org/W2166271660","https://openalex.org/W2003209439"],"abstract_inverted_index":{"The":[0],"code":[1],"and":[2],"documentation":[3],"are":[4],"available":[5],"at":[6],"http://tron-mainz.de/tron-facilities/computational-medicine/galaxy-lims/":[7]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}