{"id":"https://openalex.org/W2141541659","doi":"https://doi.org/10.1093/bioinformatics/btt113","title":"EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats","display_name":"EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats","publication_year":2013,"publication_date":"2013-03-11","ids":{"openalex":"https://openalex.org/W2141541659","doi":"https://doi.org/10.1093/bioinformatics/btt113","mag":"2141541659","pmid":"https://pubmed.ncbi.nlm.nih.gov/23479348"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt113","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/10/1325/48886384/bioinformatics_29_10_1325.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/10/1325/48886384/bioinformatics_29_10_1325.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080837511","display_name":"Jon Ison","orcid":"https://orcid.org/0000-0001-6666-1520"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB","NO"],"is_corresponding":true,"raw_author_name":"Jon Ison","raw_affiliation_strings":["1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I28407311","https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007975575","display_name":"Mat\u00fa\u0161 Kala\u0161","orcid":"https://orcid.org/0000-0002-1509-4981"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["GB","NO"],"is_corresponding":false,"raw_author_name":"Mat\u00fa\u0161 Kala\u0161","raw_affiliation_strings":["1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I28407311","https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012964587","display_name":"Inge Jonassen","orcid":"https://orcid.org/0000-0003-4110-0748"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["GB","NO"],"is_corresponding":false,"raw_author_name":"Inge Jonassen","raw_affiliation_strings":["1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I28407311","https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005347238","display_name":"Dan Bolser","orcid":"https://orcid.org/0000-0002-3991-0859"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB","NO"],"is_corresponding":false,"raw_author_name":"Dan Bolser","raw_affiliation_strings":["1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I28407311","https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044474509","display_name":"Mahmut Uluda\u011f","orcid":"https://orcid.org/0000-0001-8482-2172"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB","NO"],"is_corresponding":false,"raw_author_name":"Mahmut Uludag","raw_affiliation_strings":["1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I28407311","https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084942657","display_name":"Hamish McWilliam","orcid":"https://orcid.org/0000-0003-1769-5032"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["GB","NO"],"is_corresponding":false,"raw_author_name":"Hamish McWilliam","raw_affiliation_strings":["1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I28407311","https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037878913","display_name":"James Malone","orcid":"https://orcid.org/0000-0002-1615-2899"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB","NO"],"is_corresponding":false,"raw_author_name":"James Malone","raw_affiliation_strings":["1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I28407311","https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018972787","display_name":"Rodrigo L\u00f3pez","orcid":"https://orcid.org/0000-0003-1256-7306"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["GB","NO"],"is_corresponding":false,"raw_author_name":"Rodrigo Lopez","raw_affiliation_strings":["1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I28407311","https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081272754","display_name":"Steve Pettifer","orcid":"https://orcid.org/0000-0002-1809-5621"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["GB","NO"],"is_corresponding":false,"raw_author_name":"Steve Pettifer","raw_affiliation_strings":["1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I28407311","https://openalex.org/I4432739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109116797","display_name":"Peter Rice","orcid":null},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB","NO"],"is_corresponding":false,"raw_author_name":"Peter Rice","raw_affiliation_strings":["1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"1 EMBL European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 2Computational Biology Unit, Uni Computing, 5008 Bergen, Norway, 3Department of Informatics, University of Bergen, 5008 Bergen, Norway and 4School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I28407311","https://openalex.org/I4432739"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5080837511"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I28407311","https://openalex.org/I4432739"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":7.0371,"has_fulltext":true,"cited_by_count":287,"citation_normalized_percentile":{"value":0.97795405,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"29","issue":"10","first_page":"1325","last_page":"1332"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7403360605239868},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.709885835647583},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6890859603881836},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6368241310119629},{"id":"https://openalex.org/keywords/prot\u00e9g\u00e9","display_name":"Prot\u00e9g\u00e9","score":0.5794475674629211},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5631431341171265},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5016417503356934},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.485115647315979},{"id":"https://openalex.org/keywords/unique-identifier","display_name":"Unique identifier","score":0.43746697902679443},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3954426050186157},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.316625714302063},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2492489218711853},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1193968653678894},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11165136098861694}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7403360605239868},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.709885835647583},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6890859603881836},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6368241310119629},{"id":"https://openalex.org/C2779247653","wikidata":"https://www.wikidata.org/wiki/Q2066865","display_name":"Prot\u00e9g\u00e9","level":3,"score":0.5794475674629211},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5631431341171265},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5016417503356934},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.485115647315979},{"id":"https://openalex.org/C119839945","wikidata":"https://www.wikidata.org/wiki/Q6545185","display_name":"Unique identifier","level":3,"score":0.43746697902679443},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3954426050186157},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.316625714302063},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2492489218711853},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1193968653678894},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11165136098861694},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btt113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt113","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/10/1325/48886384/bioinformatics_29_10_1325.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23479348","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23479348","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3654706","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3654706","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/b95dccd5-fc5c-4724-8983-d81731207cee","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/b95dccd5-fc5c-4724-8983-d81731207cee","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Ison, J, Kala\u0161, M, Jonassen, I, Bolser, D, Uludag, M, McWilliam, H, Malone, J, Lopez, R, Pettifer, S & Rice, P 2013, 'EDAM: An ontology of bioinformatics operations, types of data and identifiers, topics and formats', Bioinformatics, vol. 29, no. 10, pp. 1325-1332. https://doi.org/10.1093/bioinformatics/btt113","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:bora.uib.no:1956/10659","is_oa":true,"landing_page_url":"http://hdl.handle.net/1956/10659","pdf_url":null,"source":{"id":"https://openalex.org/S4306400085","display_name":"Bergen Open Research Archive (BORA) (University of Bergen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4432739","host_organization_name":"University of Bergen","host_organization_lineage":["https://openalex.org/I4432739"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:oai:pure.atira.dk:publications/b95dccd5-fc5c-4724-8983-d81731207cee","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/edam-an-ontology-of-bioinformatics-operations-types-of-data-and-identifiers-topics-and-formats(b95dccd5-fc5c-4724-8983-d81731207cee).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Ison, J, Kala\u0161, M, Jonassen, I, Bolser, D, Uludag, M, McWilliam, H, Malone, J, Lopez, R, Pettifer, S & Rice, P 2013, 'EDAM: An ontology of bioinformatics operations, types of data and identifiers, topics and formats', Bioinformatics, vol. 29, no. 10, pp. 1325-1332. https://doi.org/10.1093/bioinformatics/btt113","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.25504/fairsharing.a6r7zs","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.a6r7zs","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt113","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/10/1325/48886384/bioinformatics_29_10_1325.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G214953350","display_name":null,"funder_award_id":"208481","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G3748656914","display_name":null,"funder_award_id":"Norway","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G5697113605","display_name":null,"funder_award_id":"211601","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7546909933","display_name":null,"funder_award_id":"284209","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8045596080","display_name":null,"funder_award_id":"178885/V30","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G8128737203","display_name":"EMBOSS: European Molecular Biology Open Software Suite","funder_award_id":"BB/G02264X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141541659.pdf","grobid_xml":"https://content.openalex.org/works/W2141541659.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W7060617","https://openalex.org/W1493945330","https://openalex.org/W1501546233","https://openalex.org/W1526965011","https://openalex.org/W1556177080","https://openalex.org/W1571433676","https://openalex.org/W1673404489","https://openalex.org/W1681831155","https://openalex.org/W1714132059","https://openalex.org/W1940888119","https://openalex.org/W1957356093","https://openalex.org/W1967176062","https://openalex.org/W1969709265","https://openalex.org/W1976894668","https://openalex.org/W1985468994","https://openalex.org/W1991056282","https://openalex.org/W1996423252","https://openalex.org/W2009569628","https://openalex.org/W2010605118","https://openalex.org/W2013571328","https://openalex.org/W2033377040","https://openalex.org/W2038777423","https://openalex.org/W2040704692","https://openalex.org/W2049625541","https://openalex.org/W2050554833","https://openalex.org/W2069435157","https://openalex.org/W2071221957","https://openalex.org/W2075123415","https://openalex.org/W2091162763","https://openalex.org/W2095612098","https://openalex.org/W2102883811","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2107658650","https://openalex.org/W2108234281","https://openalex.org/W2109904151","https://openalex.org/W2113142309","https://openalex.org/W2120772351","https://openalex.org/W2121237412","https://openalex.org/W2121792371","https://openalex.org/W2123171788","https://openalex.org/W2123854454","https://openalex.org/W2127770193","https://openalex.org/W2129687578","https://openalex.org/W2131660156","https://openalex.org/W2132247062","https://openalex.org/W2136482257","https://openalex.org/W2138608730","https://openalex.org/W2140157849","https://openalex.org/W2141541659","https://openalex.org/W2156467546","https://openalex.org/W2160943260","https://openalex.org/W2162094394","https://openalex.org/W2162832420","https://openalex.org/W2169231369","https://openalex.org/W2169826929","https://openalex.org/W2172194140","https://openalex.org/W2328044450","https://openalex.org/W2537627201","https://openalex.org/W2917476117","https://openalex.org/W4243251992","https://openalex.org/W6630000427","https://openalex.org/W6640387716","https://openalex.org/W6877228366"],"related_works":["https://openalex.org/W2413568490","https://openalex.org/W1913624564","https://openalex.org/W3130054399","https://openalex.org/W4301062032","https://openalex.org/W2343500026","https://openalex.org/W2319837024","https://openalex.org/W2390627310","https://openalex.org/W2413664130","https://openalex.org/W2051731675","https://openalex.org/W2164947858"],"abstract_inverted_index":{"jison@ebi.ac.uk.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":27},{"year":2023,"cited_by_count":34},{"year":2022,"cited_by_count":42},{"year":2021,"cited_by_count":28},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":33},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":24},{"year":2016,"cited_by_count":22},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2016-06-24T00:00:00"}
