{"id":"https://openalex.org/W2121962408","doi":"https://doi.org/10.1093/bioinformatics/btt103","title":"PeptideLocator: prediction of bioactive peptides in protein sequences","display_name":"PeptideLocator: prediction of bioactive peptides in protein sequences","publication_year":2013,"publication_date":"2013-03-16","ids":{"openalex":"https://openalex.org/W2121962408","doi":"https://doi.org/10.1093/bioinformatics/btt103","mag":"2121962408","pmid":"https://pubmed.ncbi.nlm.nih.gov/23505299"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt103","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/9/1120/48901517/bioinformatics_29_9_1120.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/9/1120/48901517/bioinformatics_29_9_1120.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061456583","display_name":"Catherine Mooney","orcid":"https://orcid.org/0000-0002-7696-1364"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Catherine Mooney","raw_affiliation_strings":["1 Complex and Adaptive Systems Laboratory, 2Conway Institute of Biomolecular and Biomedical Science, 3School of Medicine and Medical Science, 4Food For Health Ireland and 5School of Computer Science and Informatics, University College Dublin, Belfield, Dublin 4, Ireland"],"affiliations":[{"raw_affiliation_string":"1 Complex and Adaptive Systems Laboratory, 2Conway Institute of Biomolecular and Biomedical Science, 3School of Medicine and Medical Science, 4Food For Health Ireland and 5School of Computer Science and Informatics, University College Dublin, Belfield, Dublin 4, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066165392","display_name":"Niall Haslam","orcid":"https://orcid.org/0000-0001-7007-5137"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Niall J. Haslam","raw_affiliation_strings":["1 Complex and Adaptive Systems Laboratory, 2Conway Institute of Biomolecular and Biomedical Science, 3School of Medicine and Medical Science, 4Food For Health Ireland and 5School of Computer Science and Informatics, University College Dublin, Belfield, Dublin 4, Ireland"],"affiliations":[{"raw_affiliation_string":"1 Complex and Adaptive Systems Laboratory, 2Conway Institute of Biomolecular and Biomedical Science, 3School of Medicine and Medical Science, 4Food For Health Ireland and 5School of Computer Science and Informatics, University College Dublin, Belfield, Dublin 4, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068523092","display_name":"Th\u00e9r\u00e8se A. Holton","orcid":"https://orcid.org/0000-0003-0057-3178"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Th\u00e9r\u00e8se A. Holton","raw_affiliation_strings":["1 Complex and Adaptive Systems Laboratory, 2Conway Institute of Biomolecular and Biomedical Science, 3School of Medicine and Medical Science, 4Food For Health Ireland and 5School of Computer Science and Informatics, University College Dublin, Belfield, Dublin 4, Ireland"],"affiliations":[{"raw_affiliation_string":"1 Complex and Adaptive Systems Laboratory, 2Conway Institute of Biomolecular and Biomedical Science, 3School of Medicine and Medical Science, 4Food For Health Ireland and 5School of Computer Science and Informatics, University College Dublin, Belfield, Dublin 4, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016630267","display_name":"Gianluca Pollastri","orcid":"https://orcid.org/0000-0002-5825-4949"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Gianluca Pollastri","raw_affiliation_strings":["1 Complex and Adaptive Systems Laboratory, 2Conway Institute of Biomolecular and Biomedical Science, 3School of Medicine and Medical Science, 4Food For Health Ireland and 5School of Computer Science and Informatics, University College Dublin, Belfield, Dublin 4, Ireland"],"affiliations":[{"raw_affiliation_string":"1 Complex and Adaptive Systems Laboratory, 2Conway Institute of Biomolecular and Biomedical Science, 3School of Medicine and Medical Science, 4Food For Health Ireland and 5School of Computer Science and Informatics, University College Dublin, Belfield, Dublin 4, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004065601","display_name":"Denis C. Shields","orcid":"https://orcid.org/0000-0003-4015-2474"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Denis C. Shields","raw_affiliation_strings":["1 Complex and Adaptive Systems Laboratory, 2Conway Institute of Biomolecular and Biomedical Science, 3School of Medicine and Medical Science, 4Food For Health Ireland and 5School of Computer Science and Informatics, University College Dublin, Belfield, Dublin 4, Ireland"],"affiliations":[{"raw_affiliation_string":"1 Complex and Adaptive Systems Laboratory, 2Conway Institute of Biomolecular and Biomedical Science, 3School of Medicine and Medical Science, 4Food For Health Ireland and 5School of Computer Science and Informatics, University College Dublin, Belfield, Dublin 4, Ireland","institution_ids":["https://openalex.org/I100930933"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5061456583"],"corresponding_institution_ids":["https://openalex.org/I100930933"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.8357,"has_fulltext":true,"cited_by_count":83,"citation_normalized_percentile":{"value":0.89859545,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"29","issue":"9","first_page":"1120","last_page":"1126"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6062801480293274},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.5837401151657104},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4945840537548065},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.48993295431137085},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.4376599192619324},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4366821050643921},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.41597670316696167},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3800106644630432},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3505503535270691},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3268108665943146},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2832672595977783},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.26505836844444275},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07960790395736694}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6062801480293274},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.5837401151657104},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4945840537548065},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.48993295431137085},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.4376599192619324},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4366821050643921},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.41597670316696167},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3800106644630432},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3505503535270691},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3268108665943146},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2832672595977783},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.26505836844444275},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07960790395736694},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt103","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/9/1120/48901517/bioinformatics_29_9_1120.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23505299","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23505299","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:researchrepository.ucd.ie:10197/10121","is_oa":true,"landing_page_url":"http://hdl.handle.net/10197/10121","pdf_url":"http://hdl.handle.net/10197/10121","source":{"id":"https://openalex.org/S4306402280","display_name":"Research Repository UCD (University College Dublin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I100930933","host_organization_name":"University College Dublin","host_organization_lineage":["https://openalex.org/I100930933"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt103","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/9/1120/48901517/bioinformatics_29_9_1120.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7040773161","display_name":null,"funder_award_id":"08/IN.1/B1864","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"}],"funders":[{"id":"https://openalex.org/F4320320834","display_name":"Enterprise Ireland","ror":"https://ror.org/023z51242"},{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"},{"id":"https://openalex.org/F4320320858","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2121962408.pdf","grobid_xml":"https://content.openalex.org/works/W2121962408.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1841752538","https://openalex.org/W1895083409","https://openalex.org/W1964557084","https://openalex.org/W1975712224","https://openalex.org/W1975744071","https://openalex.org/W1977241485","https://openalex.org/W1997152791","https://openalex.org/W1999621557","https://openalex.org/W2003328401","https://openalex.org/W2004813038","https://openalex.org/W2008116827","https://openalex.org/W2008395305","https://openalex.org/W2013106762","https://openalex.org/W2022964681","https://openalex.org/W2027731040","https://openalex.org/W2046192291","https://openalex.org/W2065290807","https://openalex.org/W2067916951","https://openalex.org/W2075819111","https://openalex.org/W2080561486","https://openalex.org/W2082193416","https://openalex.org/W2086564404","https://openalex.org/W2092156814","https://openalex.org/W2093974041","https://openalex.org/W2094201044","https://openalex.org/W2094479119","https://openalex.org/W2097099115","https://openalex.org/W2101990239","https://openalex.org/W2112862199","https://openalex.org/W2113617961","https://openalex.org/W2114247676","https://openalex.org/W2116398954","https://openalex.org/W2117071648","https://openalex.org/W2128495797","https://openalex.org/W2128502898","https://openalex.org/W2129115651","https://openalex.org/W2134299061","https://openalex.org/W2136877194","https://openalex.org/W2138216052","https://openalex.org/W2141915739","https://openalex.org/W2156407548","https://openalex.org/W2157668563","https://openalex.org/W2158698691","https://openalex.org/W2158714788","https://openalex.org/W2160943260","https://openalex.org/W2165958610","https://openalex.org/W2169060198","https://openalex.org/W2582743722","https://openalex.org/W4233334497","https://openalex.org/W6680552695"],"related_works":["https://openalex.org/W2393806059","https://openalex.org/W1589975312","https://openalex.org/W2143537935","https://openalex.org/W2046677260","https://openalex.org/W1999832194","https://openalex.org/W2091827130","https://openalex.org/W2086851734","https://openalex.org/W2073366206","https://openalex.org/W1994459954","https://openalex.org/W1837011314"],"abstract_inverted_index":{"PeptideLocator":[0],"is":[1],"freely":[2],"available":[3],"for":[4],"academic":[5],"users":[6],"at":[7],"http://bioware.ucd.ie/.":[8]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
