{"id":"https://openalex.org/W2107772251","doi":"https://doi.org/10.1093/bioinformatics/btt086","title":"QUAST: quality assessment tool for genome assemblies","display_name":"QUAST: quality assessment tool for genome assemblies","publication_year":2013,"publication_date":"2013-02-19","ids":{"openalex":"https://openalex.org/W2107772251","doi":"https://doi.org/10.1093/bioinformatics/btt086","mag":"2107772251","pmid":"https://pubmed.ncbi.nlm.nih.gov/23422339"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt086","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt086","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3624806","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030895995","display_name":"Alexey Gurevich","orcid":"https://orcid.org/0000-0002-5855-3519"},"institutions":[{"id":"https://openalex.org/I1328943360","display_name":"Saint Petersburg Academic University","ror":"https://ror.org/05ne3s142","country_code":"RU","type":"education","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1328943360","https://openalex.org/I4210096333"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Alexey Gurevich","raw_affiliation_strings":["1 Algorithmic Biology Laboratory, St. Petersburg Academic University, Russian Academy of Sciences, St. Petersburg 194021, Russia and 2Department of Mathematics, University of California, San Diego, La Jolla, CA 92093-0112, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Laboratory, St. Petersburg Academic University, Russian Academy of Sciences, St. Petersburg 194021, Russia and 2Department of Mathematics, University of California, San Diego, La Jolla, CA 92093-0112, USA","institution_ids":["https://openalex.org/I1328943360","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064391078","display_name":"Vladislav Saveliev","orcid":"https://orcid.org/0000-0003-0853-1482"},"institutions":[{"id":"https://openalex.org/I1328943360","display_name":"Saint Petersburg Academic University","ror":"https://ror.org/05ne3s142","country_code":"RU","type":"education","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1328943360","https://openalex.org/I4210096333"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Vladislav Saveliev","raw_affiliation_strings":["1 Algorithmic Biology Laboratory, St. Petersburg Academic University, Russian Academy of Sciences, St. Petersburg 194021, Russia and 2Department of Mathematics, University of California, San Diego, La Jolla, CA 92093-0112, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Laboratory, St. Petersburg Academic University, Russian Academy of Sciences, St. Petersburg 194021, Russia and 2Department of Mathematics, University of California, San Diego, La Jolla, CA 92093-0112, USA","institution_ids":["https://openalex.org/I1328943360","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076617190","display_name":"Nikolay Vyahhi","orcid":"https://orcid.org/0009-0005-5834-7650"},"institutions":[{"id":"https://openalex.org/I1328943360","display_name":"Saint Petersburg Academic University","ror":"https://ror.org/05ne3s142","country_code":"RU","type":"education","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1328943360","https://openalex.org/I4210096333"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Nikolay Vyahhi","raw_affiliation_strings":["1 Algorithmic Biology Laboratory, St. Petersburg Academic University, Russian Academy of Sciences, St. Petersburg 194021, Russia and 2Department of Mathematics, University of California, San Diego, La Jolla, CA 92093-0112, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Laboratory, St. Petersburg Academic University, Russian Academy of Sciences, St. Petersburg 194021, Russia and 2Department of Mathematics, University of California, San Diego, La Jolla, CA 92093-0112, USA","institution_ids":["https://openalex.org/I1328943360","https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077061858","display_name":"Glenn Tesler","orcid":null},"institutions":[{"id":"https://openalex.org/I1328943360","display_name":"Saint Petersburg Academic University","ror":"https://ror.org/05ne3s142","country_code":"RU","type":"education","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1328943360","https://openalex.org/I4210096333"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Glenn Tesler","raw_affiliation_strings":["1 Algorithmic Biology Laboratory, St. Petersburg Academic University, Russian Academy of Sciences, St. Petersburg 194021, Russia and 2Department of Mathematics, University of California, San Diego, La Jolla, CA 92093-0112, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Laboratory, St. Petersburg Academic University, Russian Academy of Sciences, St. Petersburg 194021, Russia and 2Department of Mathematics, University of California, San Diego, La Jolla, CA 92093-0112, USA","institution_ids":["https://openalex.org/I1328943360","https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":62.952,"has_fulltext":false,"cited_by_count":11850,"citation_normalized_percentile":{"value":0.99959491,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"29","issue":"8","first_page":"1072","last_page":"1075"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7275000214576721,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7275000214576721,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.23729999363422394,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.005499999970197678,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7210530042648315},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6363826990127563},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6251509785652161},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.5607460141181946},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5468789935112},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4976201355457306},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4581654667854309},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20713075995445251},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07802656292915344},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0615326464176178},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.05458301305770874}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7210530042648315},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6363826990127563},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6251509785652161},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.5607460141181946},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5468789935112},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4976201355457306},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4581654667854309},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20713075995445251},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07802656292915344},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0615326464176178},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.05458301305770874},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt086","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt086","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3624806","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3624806","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmid:23422339","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23422339","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:3624806","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3624806","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1899572940","display_name":null,"funder_award_id":"P41RR024851","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G7911358210","display_name":null,"funder_award_id":"3P41RR024851-02S1","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"}],"funders":[{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1970962303","https://openalex.org/W2095841885","https://openalex.org/W2106090237","https://openalex.org/W2107282968","https://openalex.org/W2113287691","https://openalex.org/W2120902911","https://openalex.org/W2121840477","https://openalex.org/W2127768708","https://openalex.org/W2134153749","https://openalex.org/W2135361281","https://openalex.org/W2136651963","https://openalex.org/W2141920662","https://openalex.org/W2160053034","https://openalex.org/W2160756584","https://openalex.org/W2160969485","https://openalex.org/W2161546116","https://openalex.org/W2171587844"],"related_works":["https://openalex.org/W1485630101","https://openalex.org/W2498017833","https://openalex.org/W112744582","https://openalex.org/W2030059621","https://openalex.org/W3033750096","https://openalex.org/W2081245617","https://openalex.org/W2166654698","https://openalex.org/W1537221325","https://openalex.org/W2164513229","https://openalex.org/W2805452530"],"abstract_inverted_index":{"SUMMARY:":[0],"Limitations":[1],"of":[2,10,14,20,48,53,56,145,156],"genome":[3,76,134],"sequencing":[4],"techniques":[5],"have":[6,25],"led":[7],"to":[8,45,115,131],"dozens":[9],"assembly":[11,83],"algorithms,":[12],"none":[13,29],"which":[15],"is":[16,30],"perfect.":[17],"A":[18],"number":[19],"methods":[21,38],"for":[22,39,72,143],"comparing":[23,40,75],"assemblers":[24,135],"been":[26,62],"developed,":[27],"but":[28],"yet":[31],"a":[32,98,105],"recognized":[33],"benchmark.":[34],"Further,":[35],"most":[36],"existing":[37],"assemblies":[41,47,55,95],"are":[42,147,159,171],"only":[43],"applicable":[44],"new":[46,87],"finished":[49],"genomes;":[50],"the":[51,150,161],"problem":[52],"evaluating":[54,73],"previously":[57],"unsequenced":[58],"species":[59],"has":[60],"not":[61],"adequately":[63],"considered.":[64],"Here,":[65],"we":[66,128],"present":[67],"QUAST-a":[68],"quality":[69,90],"assessment":[70],"tool":[71,79],"and":[74,89,113,121,141,153],"assemblies.":[77],"This":[78],"improves":[80],"on":[81,136,160],"leading":[82],"comparison":[84],"software":[85],"with":[86,97],"ideas":[88],"metrics.":[91],"QUAST":[92,107,130,139,162],"can":[93],"evaluate":[94],"both":[96],"reference":[99],"genome,":[100],"as":[101,103],"well":[102],"without":[104],"reference.":[106],"produces":[108],"many":[109],"reports,":[110],"summary":[111],"tables":[112,140],"plots":[114,142],"help":[116],"scientists":[117],"in":[118,122,149],"their":[119,123],"research":[120],"publications.":[124],"In":[125],"this":[126],"study,":[127],"used":[129],"compare":[132],"several":[133],"three":[137],"datasets.":[138],"all":[144],"them":[146],"available":[148,172],"Supplementary":[151,169],"Material,":[152],"interactive":[154],"versions":[155],"these":[157],"reports":[158],"website.":[163],"AVAILABILITY:":[164],"http://bioinf.spbau.ru/quast":[165],".":[166],"SUPPLEMENTARY":[167],"INFORMATION:":[168],"data":[170],"at":[173],"Bioinformatics":[174],"online.":[175]},"counts_by_year":[{"year":2026,"cited_by_count":1293},{"year":2025,"cited_by_count":1750},{"year":2024,"cited_by_count":1684},{"year":2023,"cited_by_count":1556},{"year":2022,"cited_by_count":1229},{"year":2021,"cited_by_count":1325},{"year":2020,"cited_by_count":1112},{"year":2019,"cited_by_count":682},{"year":2018,"cited_by_count":439},{"year":2017,"cited_by_count":318},{"year":2016,"cited_by_count":240},{"year":2015,"cited_by_count":143},{"year":2014,"cited_by_count":58},{"year":2013,"cited_by_count":12}],"updated_date":"2026-09-03T10:48:47.769340","created_date":"2025-10-10T00:00:00"}