{"id":"https://openalex.org/W2132542342","doi":"https://doi.org/10.1093/bioinformatics/btt067","title":"Coalescent simulation in continuous space","display_name":"Coalescent simulation in continuous space","publication_year":2013,"publication_date":"2013-02-07","ids":{"openalex":"https://openalex.org/W2132542342","doi":"https://doi.org/10.1093/bioinformatics/btt067","mag":"2132542342","pmid":"https://pubmed.ncbi.nlm.nih.gov/23391497"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt067","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt067","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/7/955/49060939/bioinformatics_29_7_955.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/7/955/49060939/bioinformatics_29_7_955.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002091138","display_name":"Jerome Kelleher","orcid":"https://orcid.org/0000-0002-7894-5253"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Jerome Kelleher","raw_affiliation_strings":["1 Institute of Evolutionary Biology, University of Edinburgh, King\u2019s Buildings, West Mains Road, EH9 3JT, UK, 2Institute of Science and Technology, Am Campus I, A-3400 Klosterneuberg, Austria and 3Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Evolutionary Biology, University of Edinburgh, King\u2019s Buildings, West Mains Road, EH9 3JT, UK, 2Institute of Science and Technology, Am Campus I, A-3400 Klosterneuberg, Austria and 3Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049856888","display_name":"Nick Barton","orcid":"https://orcid.org/0000-0002-8548-5240"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicholas H. Barton","raw_affiliation_strings":["1 Institute of Evolutionary Biology, University of Edinburgh, King\u2019s Buildings, West Mains Road, EH9 3JT, UK, 2Institute of Science and Technology, Am Campus I, A-3400 Klosterneuberg, Austria and 3Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Evolutionary Biology, University of Edinburgh, King\u2019s Buildings, West Mains Road, EH9 3JT, UK, 2Institute of Science and Technology, Am Campus I, A-3400 Klosterneuberg, Austria and 3Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008267586","display_name":"Alison Etheridge","orcid":"https://orcid.org/0000-0003-3669-8423"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alison M. Etheridge","raw_affiliation_strings":["1 Institute of Evolutionary Biology, University of Edinburgh, King\u2019s Buildings, West Mains Road, EH9 3JT, UK, 2Institute of Science and Technology, Am Campus I, A-3400 Klosterneuberg, Austria and 3Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Evolutionary Biology, University of Edinburgh, King\u2019s Buildings, West Mains Road, EH9 3JT, UK, 2Institute of Science and Technology, Am Campus I, A-3400 Klosterneuberg, Austria and 3Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002091138"],"corresponding_institution_ids":["https://openalex.org/I40120149","https://openalex.org/I98677209"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":2.372,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.88980426,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"29","issue":"7","first_page":"955","last_page":"956"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.6919000148773193,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.6919000148773193,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.05609999969601631,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.030799999833106995,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coalescent-theory","display_name":"Coalescent theory","score":0.8984649181365967},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8923909664154053},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7054665088653564},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.46184059977531433},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.46069949865341187},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.45377403497695923},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18015098571777344},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1305927336215973}],"concepts":[{"id":"https://openalex.org/C2554327","wikidata":"https://www.wikidata.org/wiki/Q2698599","display_name":"Coalescent theory","level":4,"score":0.8984649181365967},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8923909664154053},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7054665088653564},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.46184059977531433},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.46069949865341187},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.45377403497695923},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18015098571777344},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1305927336215973},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btt067","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt067","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/7/955/49060939/bioinformatics_29_7_955.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23391497","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23391497","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:pub.research-explorer.ista.ac.at:2910","is_oa":true,"landing_page_url":"https://research-explorer.ista.ac.at/record/2910","pdf_url":"https://research-explorer.ista.ac.at/download/2910/5189","source":{"id":"https://openalex.org/S7407055285","display_name":"Institute of Science and Technology Austria","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kelleher J, Barton NH, Etheridge A. Coalescent simulation in continuous space. <i>Bioinformatics</i>. 2013;29(7):955-956. doi:<a href=\"https://doi.org/10.1093/bioinformatics/btt067\">10.1093/bioinformatics/btt067</a>","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.881.6919","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.881.6919","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2013/02/07/bioinformatics.btt067.full.pdf","raw_type":"text"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:d17aa86e-7118-4751-be16-432711545ff1","is_oa":false,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:d17aa86e-7118-4751-be16-432711545ff1","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PubMed (http://www.ncbi.nlm.nih.gov/pubmed/)","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt067","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt067","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/7/955/49060939/bioinformatics_29_7_955.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2091447587","display_name":"Natural Selection in Spatially Structured Populations","funder_award_id":"EP/I01361X/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G918616481","display_name":null,"funder_award_id":"EP/I01361X/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2132542342.pdf"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1939346899","https://openalex.org/W1954298592","https://openalex.org/W1964151547","https://openalex.org/W2019956985","https://openalex.org/W2040948450","https://openalex.org/W2056035161","https://openalex.org/W2140447723","https://openalex.org/W2324705510","https://openalex.org/W2752061190","https://openalex.org/W3102450310","https://openalex.org/W3158027121"],"related_works":["https://openalex.org/W2952954362","https://openalex.org/W3093602888","https://openalex.org/W3156045358","https://openalex.org/W2921578049","https://openalex.org/W2581424563","https://openalex.org/W2020599444","https://openalex.org/W2762052495","https://openalex.org/W1495737144","https://openalex.org/W4300801083","https://openalex.org/W2949794339"],"abstract_inverted_index":{"UNLABELLED:":[0],"Coalescent":[1],"simulation":[2],"has":[3],"become":[4],"an":[5,108],"indispensable":[6],"tool":[7],"in":[8,29,90,103],"population":[9],"genetics,":[10],"and":[11,78,106],"many":[12,24],"complex":[13],"evolutionary":[14],"scenarios":[15],"have":[16],"been":[17],"incorporated":[18],"into":[19],"the":[20,40,57,63,85,100],"basic":[21],"algorithm.":[22],"Despite":[23],"years":[25],"of":[26,42,45,66,87,111,115],"intense":[27],"interest":[28],"spatial":[30,50],"structure,":[31],"however,":[32],"there":[33],"are":[34,133],"no":[35],"available":[36,121,126,134],"methods":[37],"to":[38,56,98],"simulate":[39,99],"ancestry":[41],"a":[43,49,80,95,112,119],"sample":[44],"genes":[46],"that":[47],"occupy":[48],"continuum.":[51],"This":[52],"is":[53],"mainly":[54],"due":[55],"severe":[58],"technical":[59,76],"problems":[60,77],"encountered":[61],"by":[62,68],"classical":[64],"model":[65,73],"isolation":[67],"distance.":[69],"A":[70],"recently":[71],"introduced":[72],"solves":[74],"these":[75],"provides":[79],"solid":[81],"theoretical":[82],"basis":[83],"for":[84],"study":[86],"populations":[88],"evolving":[89],"continuous":[91],"space.":[92],"We":[93],"present":[94],"detailed":[96],"algorithm":[97,117],"coalescent":[101],"process":[102],"this":[104,116],"model,":[105],"provide":[107],"efficient":[109],"implementation":[110],"generalized":[113],"version":[114],"as":[118],"freely":[120],"Python":[122],"module.":[123],"AVAILABILITY:":[124],"Package":[125],"at":[127,135],"http://pypi.python.org/pypi/ercs.":[128],"SUPPLEMENTARY":[129],"INFORMATION:":[130],"Supplementary":[131],"data":[132],"Bioinformatics":[136],"online.":[137]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":7},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
