{"id":"https://openalex.org/W2111847020","doi":"https://doi.org/10.1093/bioinformatics/btt040","title":"mRNAStab\u2014a web application for mRNA stability analysis","display_name":"mRNAStab\u2014a web application for mRNA stability analysis","publication_year":2013,"publication_date":"2013-01-25","ids":{"openalex":"https://openalex.org/W2111847020","doi":"https://doi.org/10.1093/bioinformatics/btt040","mag":"2111847020","pmid":"https://pubmed.ncbi.nlm.nih.gov/23355291"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt040","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/813/17105189/btt040.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/813/17105189/btt040.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Andrei Alic","orcid":null},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Andrei Alic","raw_affiliation_strings":["1 Department of Informatics and 2Department of Biochemistry and Molecular Biology, Universitat de Val\u00e8ncia, 46100 Burjassot, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Informatics and 2Department of Biochemistry and Molecular Biology, Universitat de Val\u00e8ncia, 46100 Burjassot, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034235006","display_name":"Jos\u00e9 E. P\u00e9rez\u2010Ort\u00edn","orcid":"https://orcid.org/0000-0002-1992-513X"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 E. P\u00e9rez-Ort\u00edn","raw_affiliation_strings":["1 Department of Informatics and 2Department of Biochemistry and Molecular Biology, Universitat de Val\u00e8ncia, 46100 Burjassot, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Informatics and 2Department of Biochemistry and Molecular Biology, Universitat de Val\u00e8ncia, 46100 Burjassot, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101422443","display_name":"Joaqu\u00edn Moreno","orcid":"https://orcid.org/0000-0003-1014-0990"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Joaqu\u00edn Moreno","raw_affiliation_strings":["1 Department of Informatics and 2Department of Biochemistry and Molecular Biology, Universitat de Val\u00e8ncia, 46100 Burjassot, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Informatics and 2Department of Biochemistry and Molecular Biology, Universitat de Val\u00e8ncia, 46100 Burjassot, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028864594","display_name":"Vicente Arnau","orcid":"https://orcid.org/0000-0002-1388-6141"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Vicente Arnau","raw_affiliation_strings":["1 Department of Informatics and 2Department of Biochemistry and Molecular Biology, Universitat de Val\u00e8ncia, 46100 Burjassot, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Informatics and 2Department of Biochemistry and Molecular Biology, Universitat de Val\u00e8ncia, 46100 Burjassot, Spain","institution_ids":["https://openalex.org/I16097986"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5028864594"],"corresponding_institution_ids":["https://openalex.org/I16097986"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.1374,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.54840924,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"29","issue":"6","first_page":"813","last_page":"814"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.7263696789741516},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.5593904256820679},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.528451681137085},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5175480246543884},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5048831105232239},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.47784778475761414},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.4728049635887146},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4459885060787201},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.4374925494194031},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4087042212486267},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39791396260261536},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32091379165649414},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22944363951683044},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.13297292590141296},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12446790933609009}],"concepts":[{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.7263696789741516},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.5593904256820679},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.528451681137085},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5175480246543884},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5048831105232239},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.47784778475761414},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.4728049635887146},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4459885060787201},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.4374925494194031},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4087042212486267},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39791396260261536},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32091379165649414},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22944363951683044},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.13297292590141296},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12446790933609009},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020871","descriptor_name":"RNA Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020871","descriptor_name":"RNA Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020871","descriptor_name":"RNA Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt040","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/813/17105189/btt040.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23355291","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23355291","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:dnet:roderic_____::4faf4a1d99d316bc3d252512b8269a94","is_oa":true,"landing_page_url":"http://hdl.handle.net/10550/31698","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Alic, Andrei P\u00e9rez Ort\u00edn, Jos\u00e9 Enrique Moreno Mari\u00f1o, Joaqu\u00edn Arnau llombart, Vicente 2013 mRNAstab. A web application for mRNA stability analysis. Bioinformatics 29 813 814","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt040","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/813/17105189/btt040.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320330161","display_name":"Universitatea Tehnic\u0103 din Cluj-Napoca","ror":"https://ror.org/03r8nwp71"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111847020.pdf","grobid_xml":"https://content.openalex.org/works/W2111847020.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W84074421","https://openalex.org/W1549674551","https://openalex.org/W2048454307","https://openalex.org/W2056701786","https://openalex.org/W2064600004","https://openalex.org/W2139956963","https://openalex.org/W2154853658","https://openalex.org/W2163241016","https://openalex.org/W2167144689","https://openalex.org/W2239042225"],"related_works":["https://openalex.org/W2360935227","https://openalex.org/W2364993072","https://openalex.org/W2115576822","https://openalex.org/W2155595079","https://openalex.org/W2356429006","https://openalex.org/W2380568150","https://openalex.org/W2385787406","https://openalex.org/W2411510900","https://openalex.org/W4362472570","https://openalex.org/W2263355832"],"abstract_inverted_index":{"Abstract":[0],"Eukaryotic":[1],"gene":[2],"expression":[3],"is":[4,37,54,97,103],"regulated":[5],"both":[6],"at":[7,100,118],"the":[8,11,23,46,60],"transcription":[9,27],"and":[10,29,65,92,108],"mRNA":[12,51,66,85],"degradation":[13,30],"levels.":[14],"The":[15,94],"implementation":[16],"of":[17,26,35,45,62,84],"functional":[18],"genomics":[19],"methods":[20,49],"that":[21,78],"allow":[22],"simultaneous":[24],"measurement":[25,61],"(TR)":[28],"(DR)":[31],"rates":[32],"for":[33,50,82],"thousands":[34],"mRNAs":[36],"a":[38,75],"huge":[39],"improvement":[40],"in":[41,105],"this":[42],"field.":[43],"One":[44],"best":[47],"established":[48],"stability":[52,86],"determination":[53,83],"genomic":[55],"run-on":[56],"(GRO).":[57],"It":[58],"allows":[59],"DR,":[63],"TR":[64],"levels":[67],"during":[68,87],"cell":[69],"dynamic":[70,88],"responses.":[71],"Here,":[72],"we":[73],"offer":[74],"software":[76],"package":[77],"provides":[79],"improved":[80],"algorithms":[81],"GRO":[89],"experiments.":[90],"Availability":[91],"implementation:":[93],"program":[95],"mRNAStab":[96,102],"freely":[98],"accessible":[99],"http://mRNAStab.uv.es/.":[101],"written":[104],"C,":[106],"PHP":[107],"R.":[109],"Contact:":[110],"vicente.arnau@uv.es":[111],"Supplementary":[112,114],"information:":[113],"data":[115],"are":[116],"available":[117],"Bioinformatics":[119],"online.":[120]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
