{"id":"https://openalex.org/W2165373392","doi":"https://doi.org/10.1093/bioinformatics/btt036","title":"MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks","display_name":"MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks","publication_year":2013,"publication_date":"2013-01-28","ids":{"openalex":"https://openalex.org/W2165373392","doi":"https://doi.org/10.1093/bioinformatics/btt036","mag":"2165373392","pmid":"https://pubmed.ncbi.nlm.nih.gov/23357920"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt036","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/815/447156/btt036.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/815/447156/btt036.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075314156","display_name":"Mathias Ganter","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Mathias Ganter","raw_affiliation_strings":["1 Department of Biosystems Science and Engineering, 2SIB Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland, 3Vital-IT, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland and 4Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Department of Biosystems Science and Engineering, 2SIB Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland, 3Vital-IT, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland and 4Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100780234","display_name":"Thomas Bernard","orcid":"https://orcid.org/0000-0003-3736-1507"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Thomas Bernard","raw_affiliation_strings":["1 Department of Biosystems Science and Engineering, 2SIB Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland, 3Vital-IT, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland and 4Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Department of Biosystems Science and Engineering, 2SIB Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland, 3Vital-IT, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland and 4Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039131441","display_name":"S\u00e9bastien Moretti","orcid":"https://orcid.org/0000-0003-3947-488X"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"S\u00e9bastien Moretti","raw_affiliation_strings":["1 Department of Biosystems Science and Engineering, 2SIB Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland, 3Vital-IT, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland and 4Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Department of Biosystems Science and Engineering, 2SIB Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland, 3Vital-IT, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland and 4Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064223365","display_name":"Joerg Stelling","orcid":"https://orcid.org/0000-0002-1145-891X"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Joerg Stelling","raw_affiliation_strings":["1 Department of Biosystems Science and Engineering, 2SIB Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland, 3Vital-IT, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland and 4Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Department of Biosystems Science and Engineering, 2SIB Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland, 3Vital-IT, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland and 4Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I35440088"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006006798","display_name":"Marco Pagni","orcid":"https://orcid.org/0000-0001-9292-9463"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marco Pagni","raw_affiliation_strings":["1 Department of Biosystems Science and Engineering, 2SIB Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland, 3Vital-IT, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland and 4Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Department of Biosystems Science and Engineering, 2SIB Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland, 3Vital-IT, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland and 4Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I35440088"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5075314156"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088","https://openalex.org/I97565354"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.2406,"has_fulltext":true,"cited_by_count":116,"citation_normalized_percentile":{"value":0.96450999,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"29","issue":"6","first_page":"815","last_page":"816"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/namespace","display_name":"Namespace","score":0.9764006733894348},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.8097878694534302},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7359212040901184},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5368393659591675},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2428145706653595}],"concepts":[{"id":"https://openalex.org/C2778383056","wikidata":"https://www.wikidata.org/wiki/Q873636","display_name":"Namespace","level":2,"score":0.9764006733894348},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.8097878694534302},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7359212040901184},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5368393659591675},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2428145706653595}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1093/bioinformatics/btt036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt036","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/815/447156/btt036.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23357920","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23357920","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:iris.unil.ch:iris/122808","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/122808","pdf_url":"https://iris.unil.ch/bitstreams/ea9f63b1-246b-43b9-b2e8-379fd36ff79b/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:doc.rero.ch:302641","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:2596311","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3597148","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3597148","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3597148","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:serval.unil.ch:BIB_364863E29541","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_364863E29541","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol. 29, no. 6, pp. 815-816","raw_type":"info:eu-repo/semantics/submittedVersion"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/78676","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/78676","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 29 (6)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.3929/ethz-b-000078676","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000078676","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt036","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/815/447156/btt036.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320327577","display_name":"SystemsX.ch","ror":"https://ror.org/02s09gf16"},{"id":"https://openalex.org/F4320331322","display_name":"Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2165373392.pdf","grobid_xml":"https://content.openalex.org/works/W2165373392.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1976812345","https://openalex.org/W1998767819","https://openalex.org/W2025172803","https://openalex.org/W2047632644","https://openalex.org/W2075283200","https://openalex.org/W2081781433","https://openalex.org/W2097664794","https://openalex.org/W2100084634","https://openalex.org/W2111796963","https://openalex.org/W2121278711","https://openalex.org/W2147472054","https://openalex.org/W2156409537","https://openalex.org/W2167539386","https://openalex.org/W4238101851","https://openalex.org/W6676316728"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2370740425","https://openalex.org/W2295002787","https://openalex.org/W4233446872","https://openalex.org/W3017834062","https://openalex.org/W4205941804","https://openalex.org/W2142058655","https://openalex.org/W4239878326","https://openalex.org/W4232798715","https://openalex.org/W1992952236"],"abstract_inverted_index":{"MetaNetX.org":[0],"is":[1],"a":[2,32,36],"website":[3],"for":[4],"accessing,":[5],"analysing":[6],"and":[7,26,47,63,72,76,95],"manipulating":[8],"genome-scale":[9],"metabolic":[10,84],"networks":[11],"(GSMs)":[12],"as":[13,15],"well":[14],"biochemical":[16],"pathways.":[17],"It":[18],"consistently":[19],"integrates":[20],"data":[21,29],"from":[22],"various":[23],"public":[24],"resources":[25],"makes":[27],"the":[28,92,100],"accessible":[30],"in":[31],"standardized":[33],"format":[34],"using":[35],"common":[37,93],"namespace.":[38],"Currently,":[39],"it":[40],"provides":[41],"access":[42],"to":[43,87],"hundreds":[44],"of":[45,60,70,99],"GSMs":[46],"pathways":[48],"that":[49],"can":[50,79],"be":[51],"interactively":[52],"compared":[53],"(two":[54],"or":[55,68],"more),":[56],"analysed":[57],"(e.g.":[58],"detection":[59],"dead-end":[61],"metabolites":[62],"reactions,":[64],"flux":[65],"balance":[66],"analysis":[67],"simulation":[69],"reaction":[71],"gene":[73],"knockouts),":[74],"manipulated":[75],"exported.":[77],"Users":[78],"also":[80],"upload":[81],"their":[82],"own":[83],"models,":[85],"choose":[86],"automatically":[88],"map":[89],"them":[90],"into":[91],"namespace":[94],"subsequently":[96],"make":[97],"use":[98],"website's":[101],"functionality.":[102]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}