{"id":"https://openalex.org/W2134425821","doi":"https://doi.org/10.1093/bioinformatics/btt031","title":"Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights","display_name":"Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights","publication_year":2013,"publication_date":"2013-01-22","ids":{"openalex":"https://openalex.org/W2134425821","doi":"https://doi.org/10.1093/bioinformatics/btt031","mag":"2134425821","pmid":"https://pubmed.ncbi.nlm.nih.gov/23341503"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt031","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt031","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/686/17103708/btt031.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/686/17103708/btt031.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055263630","display_name":"Brett Trost","orcid":"https://orcid.org/0000-0003-4863-7273"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Brett Trost","raw_affiliation_strings":["Department of Computer Science, University of Saskatchewan, Saskatoon, SK S7N 5C9, Canada","Department of Computer Science, University of Saskatchewan, Saskatoon SK, S7N 5C9, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Saskatchewan, Saskatoon, SK S7N 5C9, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Department of Computer Science, University of Saskatchewan, Saskatoon SK, S7N 5C9, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034538230","display_name":"Anthony Kusalik","orcid":"https://orcid.org/0000-0001-9278-8859"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anthony Kusalik","raw_affiliation_strings":["Department of Computer Science, University of Saskatchewan, Saskatoon, SK S7N 5C9, Canada","Department of Computer Science, University of Saskatchewan, Saskatoon SK, S7N 5C9, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Saskatchewan, Saskatoon, SK S7N 5C9, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Department of Computer Science, University of Saskatchewan, Saskatoon SK, S7N 5C9, Canada","institution_ids":["https://openalex.org/I32625721"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5055263630"],"corresponding_institution_ids":["https://openalex.org/I32625721"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":3.0236,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.92085892,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"29","issue":"6","first_page":"686","last_page":"694"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.8784826993942261},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.7005007863044739},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.5858147144317627},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5782139897346497},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.5452632308006287},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.5349888205528259},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5040856599807739},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4128861427307129},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3685295581817627},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2936297357082367},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2527298927307129},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.18973416090011597},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16694697737693787},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12495553493499756}],"concepts":[{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.8784826993942261},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.7005007863044739},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.5858147144317627},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5782139897346497},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.5452632308006287},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.5349888205528259},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5040856599807739},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4128861427307129},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3685295581817627},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2936297357082367},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2527298927307129},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.18973416090011597},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16694697737693787},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12495553493499756},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt031","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt031","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/686/17103708/btt031.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23341503","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23341503","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt031","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt031","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/686/17103708/btt031.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.75,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134425821.pdf","grobid_xml":"https://content.openalex.org/works/W2134425821.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1570448133","https://openalex.org/W1588644033","https://openalex.org/W1941659294","https://openalex.org/W1968000426","https://openalex.org/W1970039616","https://openalex.org/W1990994212","https://openalex.org/W2000520554","https://openalex.org/W2005750609","https://openalex.org/W2006526432","https://openalex.org/W2010289445","https://openalex.org/W2012223636","https://openalex.org/W2030205108","https://openalex.org/W2037531261","https://openalex.org/W2038163496","https://openalex.org/W2043338013","https://openalex.org/W2051147053","https://openalex.org/W2053411993","https://openalex.org/W2060868346","https://openalex.org/W2096699854","https://openalex.org/W2104002734","https://openalex.org/W2104244040","https://openalex.org/W2116398954","https://openalex.org/W2117553655","https://openalex.org/W2120428260","https://openalex.org/W2122664708","https://openalex.org/W2126101541","https://openalex.org/W2132675424","https://openalex.org/W2135893370","https://openalex.org/W2136482257","https://openalex.org/W2138782665","https://openalex.org/W2140184966","https://openalex.org/W2141292707","https://openalex.org/W2143076230","https://openalex.org/W2144864517","https://openalex.org/W2145126338","https://openalex.org/W2150271494","https://openalex.org/W2151031196","https://openalex.org/W2154139219","https://openalex.org/W2156125289","https://openalex.org/W2157658519","https://openalex.org/W2161052703","https://openalex.org/W2161062388","https://openalex.org/W2162172965","https://openalex.org/W2162891889","https://openalex.org/W2164260969","https://openalex.org/W2166884712","https://openalex.org/W2167865654","https://openalex.org/W2911964244","https://openalex.org/W2916483810","https://openalex.org/W2966207845","https://openalex.org/W4211054902","https://openalex.org/W4233334497","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W3147805512","https://openalex.org/W1594012662","https://openalex.org/W2106134872","https://openalex.org/W2269421989","https://openalex.org/W3147624048","https://openalex.org/W2006745274","https://openalex.org/W2355042192","https://openalex.org/W2391996571","https://openalex.org/W2372627703","https://openalex.org/W1987749596"],"abstract_inverted_index":{"Abstract":[0],"Motivation:":[1],"Phosphorylation":[2],"is":[3,75,131],"the":[4,62,94,126],"most":[5],"important":[6],"post-translational":[7],"modification":[8],"in":[9,66,80,125],"eukaryotes.":[10],"Although":[11],"many":[12],"computational":[13],"phosphorylation":[14,55,78,107],"site":[15],"prediction":[16],"tools":[17],"exist":[18],"for":[19,27,34,53],"mammals,":[20],"and":[21,82,98,109],"a":[22,43,67,71,99,134],"few":[23],"were":[24],"created":[25],"specifically":[26],"Arabidopsis":[28],"thaliana,":[29],"none":[30],"are":[31,145],"currently":[32],"available":[33,132,146],"other":[35,58,123],"plants.":[36],"Results:":[37],"In":[38,114],"this":[39],"article,":[40],"we":[41,83],"propose":[42],"novel":[44],"random":[45],"forest-based":[46],"method":[47],"called":[48],"PHOSFER":[49,74,118,130],"(PHOsphorylation":[50],"Site":[51],"FindER)":[52],"applying":[54],"data":[56,144],"from":[57,112],"organisms":[59,124],"to":[60,77,116,122],"enhance":[61],"accuracy":[63],"of":[64],"predictions":[65],"target":[68],"organism.":[69],"As":[70],"test":[72],"case,":[73],"applied":[76],"sites":[79,91,108,111],"soybean,":[81,117],"show":[84],"that":[85,103],"it":[86],"more":[87],"accurately":[88],"predicts":[89],"soybean":[90],"than":[92],"both":[93],"existing":[95],"Arabidopsis-specific":[96],"predictors,":[97],"simpler":[100],"machine-learning":[101],"scheme":[102],"uses":[104],"only":[105],"known":[106],"non-phosphorylation":[110],"soybean.":[113],"addition":[115],"will":[119],"be":[120],"extended":[121],"near":[127],"future.":[128],"Availability:":[129],"via":[133],"web":[135],"interface":[136],"at":[137,147],"http://saphire.usask.ca.":[138],"Contact:":[139],"brett.trost@usask.ca":[140],"Supplementary":[141,143],"information:":[142],"Bioinformatics":[148],"online.":[149]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
