{"id":"https://openalex.org/W2129368635","doi":"https://doi.org/10.1093/bioinformatics/btt030","title":"A new algorithm for context-based biomedical diagram similarity estimation","display_name":"A new algorithm for context-based biomedical diagram similarity estimation","publication_year":2013,"publication_date":"2013-02-08","ids":{"openalex":"https://openalex.org/W2129368635","doi":"https://doi.org/10.1093/bioinformatics/btt030","mag":"2129368635","pmid":"https://pubmed.ncbi.nlm.nih.gov/23391498"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt030","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/780/48898817/bioinformatics_29_6_780.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/780/48898817/bioinformatics_29_6_780.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046202286","display_name":"Songhua Xu","orcid":"https://orcid.org/0000-0002-2276-2538"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]},{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Songhua Xu","raw_affiliation_strings":["1 Information Systems Department, College of Computing Sciences, New Jersey Institute of Technology, University Heights, Newark, NJ 07102, USA and 2National Engineering Research Center of Digital Life, State-Province Joint Laboratory of Digital Home Interactive Applications, School of Information Science and Technology, Sun Yat-sen University, Guangzhou 510006, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Information Systems Department, College of Computing Sciences, New Jersey Institute of Technology, University Heights, Newark, NJ 07102, USA and 2National Engineering Research Center of Digital Life, State-Province Joint Laboratory of Digital Home Interactive Applications, School of Information Science and Technology, Sun Yat-sen University, Guangzhou 510006, P.R. China","institution_ids":["https://openalex.org/I118118575","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023948963","display_name":"Jianqiang Sheng","orcid":"https://orcid.org/0000-0001-7057-6417"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]},{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Jianqiang Sheng","raw_affiliation_strings":["1 Information Systems Department, College of Computing Sciences, New Jersey Institute of Technology, University Heights, Newark, NJ 07102, USA and 2National Engineering Research Center of Digital Life, State-Province Joint Laboratory of Digital Home Interactive Applications, School of Information Science and Technology, Sun Yat-sen University, Guangzhou 510006, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Information Systems Department, College of Computing Sciences, New Jersey Institute of Technology, University Heights, Newark, NJ 07102, USA and 2National Engineering Research Center of Digital Life, State-Province Joint Laboratory of Digital Home Interactive Applications, School of Information Science and Technology, Sun Yat-sen University, Guangzhou 510006, P.R. China","institution_ids":["https://openalex.org/I118118575","https://openalex.org/I157773358"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100426931","display_name":"Xiaonan Luo","orcid":"https://orcid.org/0000-0002-0751-5045"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]},{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Xiaonan Luo","raw_affiliation_strings":["1 Information Systems Department, College of Computing Sciences, New Jersey Institute of Technology, University Heights, Newark, NJ 07102, USA and 2National Engineering Research Center of Digital Life, State-Province Joint Laboratory of Digital Home Interactive Applications, School of Information Science and Technology, Sun Yat-sen University, Guangzhou 510006, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Information Systems Department, College of Computing Sciences, New Jersey Institute of Technology, University Heights, Newark, NJ 07102, USA and 2National Engineering Research Center of Digital Life, State-Province Joint Laboratory of Digital Home Interactive Applications, School of Information Science and Technology, Sun Yat-sen University, Guangzhou 510006, P.R. China","institution_ids":["https://openalex.org/I118118575","https://openalex.org/I157773358"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5023948963","https://openalex.org/A5046202286"],"corresponding_institution_ids":["https://openalex.org/I118118575","https://openalex.org/I157773358"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1669843,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"29","issue":"6","first_page":"780","last_page":"789"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10601","display_name":"Handwritten Text Recognition Techniques","score":0.535099983215332,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10601","display_name":"Handwritten Text Recognition Techniques","score":0.535099983215332,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.2653999924659729,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.051899999380111694,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.784095048904419},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6156356930732727},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5919443964958191},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5838842391967773},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5714057683944702},{"id":"https://openalex.org/keywords/diagram","display_name":"Diagram","score":0.5351992845535278},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5336654186248779},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4622502028942108},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.45828360319137573},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4485187530517578},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.43077465891838074},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.35625505447387695},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.30996960401535034},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.288730263710022}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.784095048904419},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6156356930732727},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5919443964958191},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5838842391967773},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5714057683944702},{"id":"https://openalex.org/C186399060","wikidata":"https://www.wikidata.org/wiki/Q959962","display_name":"Diagram","level":2,"score":0.5351992845535278},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5336654186248779},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4622502028942108},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.45828360319137573},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4485187530517578},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.43077465891838074},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.35625505447387695},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.30996960401535034},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.288730263710022},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt030","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/780/48898817/bioinformatics_29_6_780.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23391498","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23391498","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt030","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/780/48898817/bioinformatics_29_6_780.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6800000071525574,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129368635.pdf","grobid_xml":"https://content.openalex.org/works/W2129368635.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W154984849","https://openalex.org/W255396808","https://openalex.org/W1527781663","https://openalex.org/W1528167638","https://openalex.org/W1530861867","https://openalex.org/W1531677189","https://openalex.org/W1581384732","https://openalex.org/W1906232516","https://openalex.org/W1982437225","https://openalex.org/W1992761831","https://openalex.org/W2042759024","https://openalex.org/W2049231638","https://openalex.org/W2066055909","https://openalex.org/W2069870183","https://openalex.org/W2076132601","https://openalex.org/W2085656890","https://openalex.org/W2092325601","https://openalex.org/W2106943820","https://openalex.org/W2114703224","https://openalex.org/W2120130576","https://openalex.org/W2121184547","https://openalex.org/W2125239435","https://openalex.org/W2125571753","https://openalex.org/W2126687787","https://openalex.org/W2130755207","https://openalex.org/W2132790249","https://openalex.org/W2132889418","https://openalex.org/W2135782794","https://openalex.org/W2145819879","https://openalex.org/W2147793353","https://openalex.org/W2152846401","https://openalex.org/W2154708031","https://openalex.org/W2156543375","https://openalex.org/W2158140971","https://openalex.org/W2159692873","https://openalex.org/W2160179531","https://openalex.org/W2381119176","https://openalex.org/W2601354821","https://openalex.org/W3138164102","https://openalex.org/W4235754470","https://openalex.org/W6609564928","https://openalex.org/W6631588240","https://openalex.org/W6631715352","https://openalex.org/W6639988705","https://openalex.org/W6679171934","https://openalex.org/W6681940437","https://openalex.org/W6682143827","https://openalex.org/W6683065386"],"related_works":["https://openalex.org/W2188500270","https://openalex.org/W2303858293","https://openalex.org/W2915512527","https://openalex.org/W51364034","https://openalex.org/W2798997222","https://openalex.org/W2380654781","https://openalex.org/W2114797768","https://openalex.org/W2176214140","https://openalex.org/W2516873349","https://openalex.org/W1990601549"],"abstract_inverted_index":{"MOTIVATION:":[0],"Diagrams":[1],"embedded":[2],"in":[3,87,99,166],"the":[4,54,65,77,83,88,93,104,111,129,171,174,192,195,210,214],"biomedical":[5,30,71,159,183],"literature":[6,31],"convey":[7],"rich":[8],"contents,":[9],"which":[10],"often":[11],"concisely":[12],"and":[13,26,33,45,122,186],"intuitively":[14],"highlight":[15],"key":[16],"thesis":[17],"of":[18,70,76,92,118,173,182,194,202,213],"a":[19,59,68,116,145,149,163],"research":[20],"article.":[21],"Despite":[22],"their":[23,100],"vital":[24],"importance":[25],"informative":[27],"clues":[28],"for":[29,42,63,152,177],"navigation":[32],"retrieval;":[34],"currently,":[35],"we":[36,57,169],"miss":[37],"an":[38],"effective":[39],"computational":[40],"method":[41,197],"automatically":[43],"understanding":[44],"accessing":[46],"these":[47],"valuable":[48],"resources.":[49],"PROPOSED":[50],"METHOD:":[51],"To":[52],"address":[53],"aforementioned":[55],"gap,":[56],"propose":[58],"novel":[60],"context-based":[61],"algorithm":[62,79,140,176,216],"estimating":[64],"similarity":[66,106],"between":[67],"pair":[69],"diagrams.":[72],"The":[73,138,206],"main":[74],"difference":[75],"proposed":[78],"with":[80,97,200,217,221],"respect":[81],"to":[82,126],"existing":[84],"methods":[85,220],"lies":[86],"new":[89,112,139,175,196,215],"algorithm's":[90],"incorporation":[91],"semantic":[94,130],"context":[95],"associated":[96],"diagrams":[98],"source":[101],"documents":[102],"into":[103],"diagram":[105,135,160,178,184],"estimation":[107],"process.":[108],"In":[109],"addition,":[110],"approach":[113],"also":[114],"performs":[115],"series":[117],"advanced":[119],"image":[120],"processing":[121],"text":[123],"mining":[124],"operations":[125],"comprehensively":[127],"extract":[128],"content":[131],"graphically":[132],"encoded":[133],"inside":[134],"images.":[136],"RESULTS:":[137],"can":[141],"be":[142],"deployed":[143],"as":[144],"reusable":[146],"component":[147],"providing":[148],"fundamental":[150],"function":[151],"building":[153],"many":[154],"advanced,":[155],"semantic-aware":[156],"applications":[157],"on":[158],"processing.":[161],"As":[162],"case":[164],"study,":[165],"our":[167],"experiments,":[168],"demonstrate":[170,209],"advantage":[172],"retrieval.":[179],"A":[180],"set":[181],"search":[185],"ranking":[187],"experiments":[188],"were":[189],"conducted,":[190],"where":[191],"performance":[193,211],"was":[198],"compared":[199],"that":[201],"five":[203],"peer":[204,219],"methods.":[205],"comparison":[207],"results":[208],"superiority":[212],"all":[218],"statistical":[222],"significance.":[223]},"counts_by_year":[],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
