{"id":"https://openalex.org/W2160800572","doi":"https://doi.org/10.1093/bioinformatics/btt029","title":"PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information","display_name":"PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information","publication_year":2013,"publication_date":"2013-01-17","ids":{"openalex":"https://openalex.org/W2160800572","doi":"https://doi.org/10.1093/bioinformatics/btt029","mag":"2160800572","pmid":"https://pubmed.ncbi.nlm.nih.gov/23335013"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt029","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/678/48901980/bioinformatics_29_6_678.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/678/48901980/bioinformatics_29_6_678.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100784156","display_name":"Tao Li","orcid":"https://orcid.org/0000-0002-5232-5558"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Li","raw_affiliation_strings":["1 Laboratory of Theoretical Biophysics, School of Physical Sciences and Technology, 2College of Computer Science and 3The National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, 010021, China"],"affiliations":[{"raw_affiliation_string":"1 Laboratory of Theoretical Biophysics, School of Physical Sciences and Technology, 2College of Computer Science and 3The National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, 010021, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054199900","display_name":"Qian\u2010Zhong Li","orcid":null},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qian-Zhong Li","raw_affiliation_strings":["1 Laboratory of Theoretical Biophysics, School of Physical Sciences and Technology, 2College of Computer Science and 3The National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, 010021, China"],"affiliations":[{"raw_affiliation_string":"1 Laboratory of Theoretical Biophysics, School of Physical Sciences and Technology, 2College of Computer Science and 3The National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, 010021, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090788114","display_name":"Shuai Liu","orcid":"https://orcid.org/0000-0001-9909-0664"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuai Liu","raw_affiliation_strings":["1 Laboratory of Theoretical Biophysics, School of Physical Sciences and Technology, 2College of Computer Science and 3The National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, 010021, China"],"affiliations":[{"raw_affiliation_string":"1 Laboratory of Theoretical Biophysics, School of Physical Sciences and Technology, 2College of Computer Science and 3The National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, 010021, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059065701","display_name":"Guo-Liang Fan","orcid":"https://orcid.org/0000-0003-0943-6129"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guo-Liang Fan","raw_affiliation_strings":["1 Laboratory of Theoretical Biophysics, School of Physical Sciences and Technology, 2College of Computer Science and 3The National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, 010021, China"],"affiliations":[{"raw_affiliation_string":"1 Laboratory of Theoretical Biophysics, School of Physical Sciences and Technology, 2College of Computer Science and 3The National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, 010021, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001300435","display_name":"Yongchun Zuo","orcid":"https://orcid.org/0000-0002-6065-7835"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong-Chun Zuo","raw_affiliation_strings":["1 Laboratory of Theoretical Biophysics, School of Physical Sciences and Technology, 2College of Computer Science and 3The National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, 010021, China"],"affiliations":[{"raw_affiliation_string":"1 Laboratory of Theoretical Biophysics, School of Physical Sciences and Technology, 2College of Computer Science and 3The National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, 010021, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110080320","display_name":"Yong Peng","orcid":"https://orcid.org/0000-0002-6980-4694"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong Peng","raw_affiliation_strings":["1 Laboratory of Theoretical Biophysics, School of Physical Sciences and Technology, 2College of Computer Science and 3The National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, 010021, China"],"affiliations":[{"raw_affiliation_string":"1 Laboratory of Theoretical Biophysics, School of Physical Sciences and Technology, 2College of Computer Science and 3The National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, 010021, China","institution_ids":["https://openalex.org/I2722730"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5054199900"],"corresponding_institution_ids":["https://openalex.org/I2722730"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.6954,"has_fulltext":true,"cited_by_count":48,"citation_normalized_percentile":{"value":0.90610731,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"29","issue":"6","first_page":"678","last_page":"685"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.6387838125228882},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6114039421081543},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5307265520095825},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.4735901951789856},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.47327494621276855},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46594202518463135},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.44801658391952515},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4478168487548828},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.4475935101509094},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4124462604522705},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3440249562263489},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3349965810775757},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23836973309516907},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2378116250038147},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08626845479011536}],"concepts":[{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.6387838125228882},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6114039421081543},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5307265520095825},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.4735901951789856},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.47327494621276855},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46594202518463135},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.44801658391952515},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4478168487548828},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.4475935101509094},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4124462604522705},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3440249562263489},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3349965810775757},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23836973309516907},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2378116250038147},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08626845479011536},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt029","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/678/48901980/bioinformatics_29_6_678.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23335013","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23335013","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt029","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/6/678/48901980/bioinformatics_29_6_678.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1117824055","display_name":null,"funder_award_id":"61063016","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1849587003","display_name":null,"funder_award_id":"201015","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4105266715","display_name":null,"funder_award_id":"2010150","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321106","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2160800572.pdf","grobid_xml":"https://content.openalex.org/works/W2160800572.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1506378101","https://openalex.org/W1521470590","https://openalex.org/W1543773936","https://openalex.org/W1549656520","https://openalex.org/W1577314069","https://openalex.org/W1618905105","https://openalex.org/W1700073007","https://openalex.org/W1971894358","https://openalex.org/W1983703472","https://openalex.org/W1990748933","https://openalex.org/W1998518361","https://openalex.org/W2005423065","https://openalex.org/W2013571070","https://openalex.org/W2018235493","https://openalex.org/W2022058405","https://openalex.org/W2029480990","https://openalex.org/W2047596219","https://openalex.org/W2049367839","https://openalex.org/W2051167924","https://openalex.org/W2084438884","https://openalex.org/W2084896315","https://openalex.org/W2087453953","https://openalex.org/W2089716128","https://openalex.org/W2096986143","https://openalex.org/W2119948329","https://openalex.org/W2128533758","https://openalex.org/W2130479394","https://openalex.org/W2144347309","https://openalex.org/W2145468550","https://openalex.org/W2149997286","https://openalex.org/W2152116196","https://openalex.org/W2153026148","https://openalex.org/W2153153865","https://openalex.org/W2153635508","https://openalex.org/W2154447604","https://openalex.org/W2155653793","https://openalex.org/W2165745599","https://openalex.org/W2166248605","https://openalex.org/W2548695521","https://openalex.org/W3182575328","https://openalex.org/W6798449959"],"related_works":["https://openalex.org/W2090763504","https://openalex.org/W148178222","https://openalex.org/W2104657898","https://openalex.org/W1948992892","https://openalex.org/W1886884218","https://openalex.org/W1910826599","https://openalex.org/W1980100242","https://openalex.org/W2530420969","https://openalex.org/W2051187167","https://openalex.org/W4315815996"],"abstract_inverted_index":{"Evaluated":[0],"on":[1,37,70],"a":[2,38,46,57],"new":[3],"non-redundant":[4],"protein":[5],"set":[6],"with":[7,29,40,45,56],"224":[8],"chains,":[9],"the":[10,19,62,71,81],"method":[11,52,93],"has":[12],"80.7%":[13],"sensitivity":[14,31],"and":[15,32],"82.9%":[16],"specificity":[17,34],"in":[18,77,97],"5-fold":[20],"cross-validation":[21],"test.":[22],"In":[23],"addition,":[24],"it":[25],"predicts":[26,53],"DNA-binding":[27,54],"sites":[28,55],"85.1%":[30],"85.3%":[33],"when":[35,68],"tested":[36,69],"dataset":[39],"62":[41],"protein-DNA":[42],"complexes.":[43],"Compared":[44],"recently":[47],"published":[48],"method,":[49],"BindN+,":[50],"our":[51,91],"7%":[58],"better":[59],"area":[60],"under":[61],"receiver":[63],"operating":[64],"characteristic":[65],"curve":[66],"value":[67],"same":[72],"dataset.":[73],"Many":[74],"important":[75],"problems":[76],"cell":[78],"biology":[79],"require":[80],"dense":[82],"non-linear":[83],"interactions":[84],"between":[85],"functional":[86],"modules":[87],"be":[88,95],"considered.":[89],"Thus,":[90],"prediction":[92],"will":[94],"useful":[96],"detecting":[98],"such":[99],"complex":[100],"interactions.":[101]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
