{"id":"https://openalex.org/W2117098110","doi":"https://doi.org/10.1093/bioinformatics/btt017","title":"CRAVAT: cancer-related analysis of variants toolkit","display_name":"CRAVAT: cancer-related analysis of variants toolkit","publication_year":2013,"publication_date":"2013-01-16","ids":{"openalex":"https://openalex.org/W2117098110","doi":"https://doi.org/10.1093/bioinformatics/btt017","mag":"2117098110","pmid":"https://pubmed.ncbi.nlm.nih.gov/23325621"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt017","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt017","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btt017","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028941911","display_name":"Christopher Douville","orcid":"https://orcid.org/0000-0002-2510-4151"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Christopher Douville","raw_affiliation_strings":["1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I185103710","https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101461760","display_name":"Hannah Carter","orcid":"https://orcid.org/0000-0002-1729-2463"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Hannah Carter","raw_affiliation_strings":["1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I185103710","https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063087377","display_name":"Rick Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Rick Kim","raw_affiliation_strings":["1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I185103710","https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079249587","display_name":"Noushin Niknafs","orcid":"https://orcid.org/0000-0002-4852-3674"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Noushin Niknafs","raw_affiliation_strings":["1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I185103710","https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054009720","display_name":"Mark Diekhans","orcid":"https://orcid.org/0000-0002-0430-0989"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Mark Diekhans","raw_affiliation_strings":["1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I185103710","https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054704814","display_name":"Peter D. Stenson","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Peter D. Stenson","raw_affiliation_strings":["1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I185103710","https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042443600","display_name":"D.N. Cooper","orcid":"https://orcid.org/0000-0002-8943-8484"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"David N. Cooper","raw_affiliation_strings":["1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I185103710","https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063865589","display_name":"Micha\u00ebl Ryan","orcid":"https://orcid.org/0000-0003-4585-7174"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Michael Ryan","raw_affiliation_strings":["1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I185103710","https://openalex.org/I79510175"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034118773","display_name":"Rachel Karchin","orcid":"https://orcid.org/0000-0002-5069-1239"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":true,"raw_author_name":"Rachel Karchin","raw_affiliation_strings":["1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA, 2In Silico Solutions, Fairfax, VA, USA, 3Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95076, USA and 4Institute of Medical Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I185103710","https://openalex.org/I79510175"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5034118773"],"corresponding_institution_ids":["https://openalex.org/I145311948","https://openalex.org/I185103710","https://openalex.org/I79510175"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.0347,"has_fulltext":false,"cited_by_count":181,"citation_normalized_percentile":{"value":0.94579991,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"29","issue":"5","first_page":"647","last_page":"648"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6102803945541382},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.5018033981323242},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45652690529823303},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.44735538959503174},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35218286514282227},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24719595909118652},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07084038853645325}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6102803945541382},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.5018033981323242},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45652690529823303},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.44735538959503174},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35218286514282227},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24719595909118652},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07084038853645325},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btt017","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt017","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23325621","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23325621","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmid:29092935","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29092935","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cancer research","raw_type":null},{"id":"pmh:oai:europepmc.org:2579194","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3582272","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:https://orca.cardiff.ac.uk:76233","is_oa":false,"landing_page_url":"https://orca.cardiff.ac.uk/id/eprint/76233/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401195","display_name":"ORCA Online Research @Cardiff (Cardiff University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79510175","host_organization_name":"Cardiff University","host_organization_lineage":["https://openalex.org/I79510175"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3582272","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3582272","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5850945","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5850945","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cancer Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt017","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt017","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2249777800","display_name":null,"funder_award_id":"CA 152432","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G873353874","display_name":null,"funder_award_id":"R21CA152432","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1494567425","https://openalex.org/W1871096589","https://openalex.org/W1900984040","https://openalex.org/W1967239133","https://openalex.org/W1977109152","https://openalex.org/W1998767819","https://openalex.org/W2011657487","https://openalex.org/W2044433401","https://openalex.org/W2059271652","https://openalex.org/W2072572998","https://openalex.org/W2096791516","https://openalex.org/W2100867326","https://openalex.org/W2101735289","https://openalex.org/W2107903949","https://openalex.org/W2116398954","https://openalex.org/W2118151336","https://openalex.org/W2120240539","https://openalex.org/W2143238378","https://openalex.org/W2146973661","https://openalex.org/W2153010521","https://openalex.org/W2158116492","https://openalex.org/W2159522138","https://openalex.org/W2161661150","https://openalex.org/W2165419403","https://openalex.org/W2167949449","https://openalex.org/W2171645979","https://openalex.org/W2256016639","https://openalex.org/W2344185956","https://openalex.org/W2492699418","https://openalex.org/W2911964244","https://openalex.org/W4210347168","https://openalex.org/W4233334497"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2506292322","https://openalex.org/W4283209547","https://openalex.org/W4367627632","https://openalex.org/W2184980933","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890"],"abstract_inverted_index":{"SUMMARY:":[0],"Advances":[1],"in":[2,11],"sequencing":[3,14],"technology":[4],"have":[5,22],"greatly":[6],"reduced":[7],"the":[8,61],"costs":[9],"incurred":[10],"collecting":[12],"raw":[13],"data.":[15],"Academic":[16],"laboratories":[17],"and":[18,34,64,68,88,99],"researchers":[19],"therefore":[20],"now":[21],"access":[23],"to":[24,37,59,104],"very":[25],"large":[26],"datasets":[27],"of":[28,51,66,77],"genomic":[29],"alterations":[30,70],"but":[31],"limited":[32],"time":[33],"computational":[35],"resources":[36],"analyse":[38],"their":[39],"potential":[40],"biological":[41],"importance.":[42],"Here,":[43],"we":[44],"provide":[45],"a":[46],"web-based":[47],"application,":[48],"Cancer-Related":[49,75],"Analysis":[50,76],"Variants":[52,78],"Toolkit,":[53],"designed":[54],"with":[55],"an":[56],"easy-to-use":[57],"interface":[58],"facilitate":[60],"high-throughput":[62],"assessment":[63],"prioritization":[65],"genes":[67],"missense":[69],"important":[71],"for":[72,83],"cancer":[73],"tumorigenesis.":[74],"Toolkit":[79],"provides":[80],"predictive":[81],"scores":[82],"germline":[84],"variants,":[85],"somatic":[86],"mutations":[87],"relative":[89],"gene":[90],"importance,":[91],"as":[92,94,106],"well":[93],"annotations":[95],"from":[96],"published":[97],"literature":[98],"databases.":[100],"Results":[101],"are":[102],"emailed":[103],"users":[105],"MS":[107],"Excel":[108],"spreadsheets":[109],"and/or":[110],"tab-separated":[111],"text":[112],"files.":[113],"AVAILABILITY:":[114],"http://www.cravat.us/":[115]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":31},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":19},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2016-06-24T00:00:00"}
