{"id":"https://openalex.org/W2103151642","doi":"https://doi.org/10.1093/bioinformatics/btt014","title":"miRCancer: a microRNA\u2013cancer association database constructed by text mining on literature","display_name":"miRCancer: a microRNA\u2013cancer association database constructed by text mining on literature","publication_year":2013,"publication_date":"2013-01-16","ids":{"openalex":"https://openalex.org/W2103151642","doi":"https://doi.org/10.1093/bioinformatics/btt014","mag":"2103151642","pmid":"https://pubmed.ncbi.nlm.nih.gov/23325619"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt014","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt014","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021534208","display_name":"Boya Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I186335123","display_name":"East Carolina University","ror":"https://ror.org/01vx35703","country_code":"US","type":"education","lineage":["https://openalex.org/I186335123"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Boya Xie","raw_affiliation_strings":["1 Department of Computer Science, East Carolina University, Greenville, NC 27858 and 2Department of Physiology, Brody School of Medicine, East Carolina University, Greenville, NC 27834, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, East Carolina University, Greenville, NC 27858 and 2Department of Physiology, Brody School of Medicine, East Carolina University, Greenville, NC 27834, USA","institution_ids":["https://openalex.org/I186335123"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057856514","display_name":"Qin Ding","orcid":"https://orcid.org/0000-0002-8902-795X"},"institutions":[{"id":"https://openalex.org/I186335123","display_name":"East Carolina University","ror":"https://ror.org/01vx35703","country_code":"US","type":"education","lineage":["https://openalex.org/I186335123"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Qin Ding","raw_affiliation_strings":["1 Department of Computer Science, East Carolina University, Greenville, NC 27858 and 2Department of Physiology, Brody School of Medicine, East Carolina University, Greenville, NC 27834, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, East Carolina University, Greenville, NC 27858 and 2Department of Physiology, Brody School of Medicine, East Carolina University, Greenville, NC 27834, USA","institution_ids":["https://openalex.org/I186335123"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083676387","display_name":"Hongjin Han","orcid":null},"institutions":[{"id":"https://openalex.org/I186335123","display_name":"East Carolina University","ror":"https://ror.org/01vx35703","country_code":"US","type":"education","lineage":["https://openalex.org/I186335123"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongjin Han","raw_affiliation_strings":["1 Department of Computer Science, East Carolina University, Greenville, NC 27858 and 2Department of Physiology, Brody School of Medicine, East Carolina University, Greenville, NC 27834, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, East Carolina University, Greenville, NC 27858 and 2Department of Physiology, Brody School of Medicine, East Carolina University, Greenville, NC 27834, USA","institution_ids":["https://openalex.org/I186335123"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027518636","display_name":"Di Wu","orcid":"https://orcid.org/0000-0002-2594-1072"},"institutions":[{"id":"https://openalex.org/I186335123","display_name":"East Carolina University","ror":"https://ror.org/01vx35703","country_code":"US","type":"education","lineage":["https://openalex.org/I186335123"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Di Wu","raw_affiliation_strings":["1 Department of Computer Science, East Carolina University, Greenville, NC 27858 and 2Department of Physiology, Brody School of Medicine, East Carolina University, Greenville, NC 27834, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, East Carolina University, Greenville, NC 27858 and 2Department of Physiology, Brody School of Medicine, East Carolina University, Greenville, NC 27834, USA","institution_ids":["https://openalex.org/I186335123"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5057856514"],"corresponding_institution_ids":["https://openalex.org/I186335123"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":10.4825,"has_fulltext":false,"cited_by_count":597,"citation_normalized_percentile":{"value":0.99017853,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"29","issue":"5","first_page":"638","last_page":"644"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.7369999885559082,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.7369999885559082,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.06080000102519989,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.023399999365210533,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7921784520149231},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.6115061044692993},{"id":"https://openalex.org/keywords/association-rule-learning","display_name":"Association rule learning","score":0.5782083868980408},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5121026039123535},{"id":"https://openalex.org/keywords/suppressor","display_name":"Suppressor","score":0.4382167160511017},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.4238867163658142},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4023726284503937},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36756622791290283},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3401625454425812},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3041613698005676},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24483367800712585},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14378276467323303},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11773428320884705},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.08397498726844788}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7921784520149231},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.6115061044692993},{"id":"https://openalex.org/C193524817","wikidata":"https://www.wikidata.org/wiki/Q386780","display_name":"Association rule learning","level":2,"score":0.5782083868980408},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5121026039123535},{"id":"https://openalex.org/C179185449","wikidata":"https://www.wikidata.org/wiki/Q219699","display_name":"Suppressor","level":3,"score":0.4382167160511017},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.4238867163658142},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4023726284503937},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36756622791290283},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3401625454425812},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3041613698005676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24483367800712585},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14378276467323303},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11773428320884705},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.08397498726844788},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt014","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt014","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23325619","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23325619","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W129289297","https://openalex.org/W1667789979","https://openalex.org/W1920303762","https://openalex.org/W1958284284","https://openalex.org/W1975304818","https://openalex.org/W1983514447","https://openalex.org/W1983826553","https://openalex.org/W1995082021","https://openalex.org/W2001605136","https://openalex.org/W2002780263","https://openalex.org/W2014849717","https://openalex.org/W2017199818","https://openalex.org/W2053835153","https://openalex.org/W2059382687","https://openalex.org/W2070571588","https://openalex.org/W2101117089","https://openalex.org/W2110666579","https://openalex.org/W2113209482","https://openalex.org/W2128768066","https://openalex.org/W2134118500","https://openalex.org/W2135283418","https://openalex.org/W2135836598","https://openalex.org/W2138664009","https://openalex.org/W4214489112"],"related_works":["https://openalex.org/W2751920613","https://openalex.org/W2415164632","https://openalex.org/W2392697706","https://openalex.org/W2391054147","https://openalex.org/W366033468","https://openalex.org/W2009548550","https://openalex.org/W3032589310","https://openalex.org/W2057742104","https://openalex.org/W4283692078","https://openalex.org/W2025542119"],"abstract_inverted_index":{"MOTIVATION:":[0],"Research":[1],"interests":[2],"in":[3,8,34,69,81,96,125],"microRNAs":[4,17,159],"have":[5,14,18,72,78,111],"increased":[6],"rapidly":[7],"the":[9,61,76,82,115,137,165,178],"past":[10],"decade.":[11],"Many":[12],"studies":[13],"showed":[15],"that":[16,47,63],"close":[19],"relationships":[20,156],"with":[21],"various":[22],"human":[23,162],"cancers,":[24],"and":[25,93,160],"they":[26],"potentially":[27],"could":[28],"be":[29],"used":[30,120],"as":[31,37],"cancer":[32,70],"indicators":[33],"diagnosis":[35],"or":[36],"a":[38,97],"suppressor":[39],"for":[40],"treatment":[41],"purposes.":[42],"There":[43],"are":[44,146],"several":[45],"databases":[46],"contain":[48],"microRNA-cancer":[49,88,128],"associations":[50,89,145],"predicted":[51],"by":[52,90,135],"computational":[53],"methods":[54],"but":[55],"few":[56],"from":[57],"empirical":[58],"results.":[59],"Despite":[60],"fact":[62],"abundant":[64],"experiments":[65],"investigating":[66],"microRNA":[67,123],"expressions":[68,124],"cells":[71],"been":[73],"carried":[74],"out,":[75],"results":[77],"remain":[79],"scattered":[80],"literature.":[83],"We":[84],"propose":[85],"to":[86,121],"extract":[87],"text":[91,103,138],"mining":[92,104,139],"store":[94],"them":[95],"database":[98],"called":[99],"miRCancer.":[100],"RESULTS:":[101],"The":[102,127],"is":[105,132,174],"based":[106],"on":[107,177],"75":[108],"rules":[109],"we":[110],"constructed,":[112],"which":[113],"represent":[114],"common":[116],"sentence":[117],"structures":[118],"typically":[119],"state":[122],"cancers.":[126],"association":[129],"database,":[130],"miRCancer,":[131],"updated":[133],"regularly":[134],"running":[136],"algorithm":[140],"against":[141],"PubMed.":[142],"All":[143],"miRNA-cancer":[144],"confirmed":[147],"manually":[148],"after":[149],"automatic":[150],"extraction.":[151],"miRCancer":[152,173],"currently":[153],"documents":[154],"878":[155],"between":[157],"236":[158],"79":[161],"cancers":[163],"through":[164],"processing":[166],"of":[167],">26":[168],"000":[169],"published":[170],"articles.":[171],"AVAILABILITY:":[172],"freely":[175],"available":[176],"web":[179],"at":[180],"http://mircancer.ecu.edu/":[181]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":27},{"year":2024,"cited_by_count":41},{"year":2023,"cited_by_count":49},{"year":2022,"cited_by_count":80},{"year":2021,"cited_by_count":61},{"year":2020,"cited_by_count":62},{"year":2019,"cited_by_count":59},{"year":2018,"cited_by_count":50},{"year":2017,"cited_by_count":52},{"year":2016,"cited_by_count":38},{"year":2015,"cited_by_count":34},{"year":2014,"cited_by_count":25},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
