{"id":"https://openalex.org/W2122855404","doi":"https://doi.org/10.1093/bioinformatics/btt011","title":"ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution","display_name":"ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution","publication_year":2013,"publication_date":"2013-01-12","ids":{"openalex":"https://openalex.org/W2122855404","doi":"https://doi.org/10.1093/bioinformatics/btt011","mag":"2122855404","pmid":"https://pubmed.ncbi.nlm.nih.gov/23314323"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt011","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/5/649/50335804/bioinformatics_29_5_649.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/5/649/50335804/bioinformatics_29_5_649.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100410871","display_name":"Jing\u2010Woei Li","orcid":"https://orcid.org/0000-0001-6167-7689"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Jing-Woei Li","raw_affiliation_strings":["1 School of Life Sciences, 2Hong Kong Bioinformatics Centre and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","1School of Life Sciences, 2Hong Kong Bioinformatics Centre, and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Life Sciences, 2Hong Kong Bioinformatics Centre and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"1School of Life Sciences, 2Hong Kong Bioinformatics Centre, and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045178600","display_name":"Raymond Wan","orcid":"https://orcid.org/0000-0003-3202-7008"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Raymond Wan","raw_affiliation_strings":["1 School of Life Sciences, 2Hong Kong Bioinformatics Centre and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","1School of Life Sciences, 2Hong Kong Bioinformatics Centre, and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Life Sciences, 2Hong Kong Bioinformatics Centre and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"1School of Life Sciences, 2Hong Kong Bioinformatics Centre, and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021290022","display_name":"Allen Chi-Shing Yu","orcid":"https://orcid.org/0000-0002-9568-8316"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Chi-Shing Yu","raw_affiliation_strings":["1 School of Life Sciences, 2Hong Kong Bioinformatics Centre and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","1School of Life Sciences, 2Hong Kong Bioinformatics Centre, and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Life Sciences, 2Hong Kong Bioinformatics Centre and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"1School of Life Sciences, 2Hong Kong Bioinformatics Centre, and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052009729","display_name":"Ngai Na Co","orcid":"https://orcid.org/0000-0001-8739-0870"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ngai Na Co","raw_affiliation_strings":["1 School of Life Sciences, 2Hong Kong Bioinformatics Centre and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","1School of Life Sciences, 2Hong Kong Bioinformatics Centre, and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Life Sciences, 2Hong Kong Bioinformatics Centre and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"1School of Life Sciences, 2Hong Kong Bioinformatics Centre, and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109193440","display_name":"Nathalie Wong","orcid":"https://orcid.org/0000-0003-2397-9189"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Nathalie Wong","raw_affiliation_strings":["1 School of Life Sciences, 2Hong Kong Bioinformatics Centre and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","1School of Life Sciences, 2Hong Kong Bioinformatics Centre, and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Life Sciences, 2Hong Kong Bioinformatics Centre and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"1School of Life Sciences, 2Hong Kong Bioinformatics Centre, and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080235217","display_name":"Ting\u2010Fung Chan","orcid":"https://orcid.org/0000-0002-0489-3884"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ting-Fung Chan","raw_affiliation_strings":["1 School of Life Sciences, 2Hong Kong Bioinformatics Centre and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","1School of Life Sciences, 2Hong Kong Bioinformatics Centre, and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Life Sciences, 2Hong Kong Bioinformatics Centre and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"1School of Life Sciences, 2Hong Kong Bioinformatics Centre, and 3Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100410871"],"corresponding_institution_ids":["https://openalex.org/I177725633"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":4.2606,"has_fulltext":true,"cited_by_count":80,"citation_normalized_percentile":{"value":0.95249486,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"29","issue":"5","first_page":"649","last_page":"651"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3959999978542328,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3959999978542328,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.12939999997615814,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.04010000079870224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.6571440100669861},{"id":"https://openalex.org/keywords/base","display_name":"Base (topology)","score":0.6092896461486816},{"id":"https://openalex.org/keywords/fusion","display_name":"Fusion","score":0.5539153218269348},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.522952139377594},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43697232007980347},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37357786297798157},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3355085849761963},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.116627037525177},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.05517798662185669}],"concepts":[{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.6571440100669861},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.6092896461486816},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.5539153218269348},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.522952139377594},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43697232007980347},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37357786297798157},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3355085849761963},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.116627037525177},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.05517798662185669},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016662","descriptor_name":"Virus Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016662","descriptor_name":"Virus Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016662","descriptor_name":"Virus Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btt011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt011","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/5/649/50335804/bioinformatics_29_5_649.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3582262","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3582262","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmid:23314323","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23314323","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2579189","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3582262","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt011","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/5/649/50335804/bioinformatics_29_5_649.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321920","display_name":"Innovation and Technology Commission","ror":"https://ror.org/04vf9tr09"},{"id":"https://openalex.org/F4320329815","display_name":"Hong Kong Government","ror":"https://ror.org/034179816"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2122855404.pdf","grobid_xml":"https://content.openalex.org/works/W2122855404.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1578954095","https://openalex.org/W1958134851","https://openalex.org/W1970871207","https://openalex.org/W1972638272","https://openalex.org/W1987350137","https://openalex.org/W1990728924","https://openalex.org/W2029623390","https://openalex.org/W2036169183","https://openalex.org/W2046156611","https://openalex.org/W2067982382","https://openalex.org/W2073378251","https://openalex.org/W2075326357","https://openalex.org/W2076038974","https://openalex.org/W2082481679","https://openalex.org/W2088612061","https://openalex.org/W2101120467","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2112888168","https://openalex.org/W2113606293","https://openalex.org/W2114007327","https://openalex.org/W2115669202","https://openalex.org/W2117112774","https://openalex.org/W2117979362","https://openalex.org/W2124887618","https://openalex.org/W2126419817","https://openalex.org/W2126493747","https://openalex.org/W2132298698","https://openalex.org/W2136879569","https://openalex.org/W2136983648","https://openalex.org/W2141860194","https://openalex.org/W2156274673","https://openalex.org/W2158274053","https://openalex.org/W2169145121","https://openalex.org/W2320342345","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W2082780921","https://openalex.org/W1517180214","https://openalex.org/W2099421762","https://openalex.org/W2530546662","https://openalex.org/W2967030268","https://openalex.org/W2025517136","https://openalex.org/W2185253430","https://openalex.org/W4210345652","https://openalex.org/W634414395","https://openalex.org/W2028664052"],"abstract_inverted_index":{"SUMMARY:":[0],"Insertional":[1],"mutagenesis":[2],"from":[3],"virus":[4],"infection":[5],"is":[6,78,86],"an":[7,61],"important":[8],"pathogenic":[9],"risk":[10],"for":[11],"the":[12,17],"development":[13],"of":[14,19,23,69],"cancer.":[15],"Despite":[16],"advent":[18],"high-throughput":[20],"sequencing,":[21],"discovery":[22],"viral":[24,29],"integration":[25],"sites":[26],"and":[27,46,53,67,81],"expressed":[28],"fusion":[30],"events":[31],"are":[32],"still":[33],"limited.":[34],"Here,":[35],"we":[36],"present":[37],"ViralFusionSeq":[38],"(VFS),":[39],"which":[40],"combines":[41],"soft-clipping":[42],"information,":[43],"read-pair":[44],"analysis":[45],"targeted":[47],"de":[48],"novo":[49],"assembly":[50],"to":[51],"discover":[52],"annotate":[54],"viral-human":[55],"fusions.":[56],"VFS":[57,77,85],"was":[58],"used":[59],"in":[60],"RNA-Seq":[62],"experiment,":[63],"simulated":[64],"DNA-Seq":[65,71],"experiment":[66],"re-analysis":[68],"published":[70],"datasets.":[72],"Our":[73],"experiments":[74],"demonstrated":[75],"that":[76],"both":[79],"sensitive":[80],"highly":[82],"accurate.":[83],"AVAILABILITY:":[84],"distributed":[87],"under":[88],"GPL":[89],"version":[90],"3":[91],"at":[92],"http://hkbic.cuhk.edu.hk/software/viralfusionseq":[93]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":4}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
