{"id":"https://openalex.org/W2141316905","doi":"https://doi.org/10.1093/bioinformatics/bts726","title":"G e S to D ifferent : a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process","display_name":"G e S to D ifferent : a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process","publication_year":2013,"publication_date":"2013-01-03","ids":{"openalex":"https://openalex.org/W2141316905","doi":"https://doi.org/10.1093/bioinformatics/bts726","mag":"2141316905","pmid":"https://pubmed.ncbi.nlm.nih.gov/23292740"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts726","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts726","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037919963","display_name":"Marco Antoniotti","orcid":"https://orcid.org/0000-0002-2823-6838"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["CA","IT"],"is_corresponding":false,"raw_author_name":"Marco Antoniotti","raw_affiliation_strings":["1 Department of Informatics, Systems and Communication, University of Milan Bicocca, Viale Sarca 336, 20126, Milano, Italy and 2Bader Lab, The Donnelly Centre, University of Toronto, 160 College Street, M5S 3E1, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Informatics, Systems and Communication, University of Milan Bicocca, Viale Sarca 336, 20126, Milano, Italy and 2Bader Lab, The Donnelly Centre, University of Toronto, 160 College Street, M5S 3E1, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750","https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010789029","display_name":"Gary D. Bader","orcid":"https://orcid.org/0000-0003-0185-8861"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["CA","IT"],"is_corresponding":false,"raw_author_name":"Gary D. Bader","raw_affiliation_strings":["1 Department of Informatics, Systems and Communication, University of Milan Bicocca, Viale Sarca 336, 20126, Milano, Italy and 2Bader Lab, The Donnelly Centre, University of Toronto, 160 College Street, M5S 3E1, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Informatics, Systems and Communication, University of Milan Bicocca, Viale Sarca 336, 20126, Milano, Italy and 2Bader Lab, The Donnelly Centre, University of Toronto, 160 College Street, M5S 3E1, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750","https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033643165","display_name":"Giulio Caravagna","orcid":"https://orcid.org/0000-0003-4240-3265"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["CA","IT"],"is_corresponding":false,"raw_author_name":"Giulio Caravagna","raw_affiliation_strings":["1 Department of Informatics, Systems and Communication, University of Milan Bicocca, Viale Sarca 336, 20126, Milano, Italy and 2Bader Lab, The Donnelly Centre, University of Toronto, 160 College Street, M5S 3E1, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Informatics, Systems and Communication, University of Milan Bicocca, Viale Sarca 336, 20126, Milano, Italy and 2Bader Lab, The Donnelly Centre, University of Toronto, 160 College Street, M5S 3E1, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750","https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088408405","display_name":"Silvia Crippa","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["CA","IT"],"is_corresponding":false,"raw_author_name":"Silvia Crippa","raw_affiliation_strings":["1 Department of Informatics, Systems and Communication, University of Milan Bicocca, Viale Sarca 336, 20126, Milano, Italy and 2Bader Lab, The Donnelly Centre, University of Toronto, 160 College Street, M5S 3E1, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Informatics, Systems and Communication, University of Milan Bicocca, Viale Sarca 336, 20126, Milano, Italy and 2Bader Lab, The Donnelly Centre, University of Toronto, 160 College Street, M5S 3E1, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750","https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055916343","display_name":"Alex Graudenzi","orcid":"https://orcid.org/0000-0001-5452-1918"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["CA","IT"],"is_corresponding":false,"raw_author_name":"Alex Graudenzi","raw_affiliation_strings":["1 Department of Informatics, Systems and Communication, University of Milan Bicocca, Viale Sarca 336, 20126, Milano, Italy and 2Bader Lab, The Donnelly Centre, University of Toronto, 160 College Street, M5S 3E1, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Informatics, Systems and Communication, University of Milan Bicocca, Viale Sarca 336, 20126, Milano, Italy and 2Bader Lab, The Donnelly Centre, University of Toronto, 160 College Street, M5S 3E1, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750","https://openalex.org/I66752286"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073163964","display_name":"Giancarlo Mauri","orcid":"https://orcid.org/0000-0003-3520-4022"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["CA","IT"],"is_corresponding":false,"raw_author_name":"Giancarlo Mauri","raw_affiliation_strings":["1 Department of Informatics, Systems and Communication, University of Milan Bicocca, Viale Sarca 336, 20126, Milano, Italy and 2Bader Lab, The Donnelly Centre, University of Toronto, 160 College Street, M5S 3E1, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Informatics, Systems and Communication, University of Milan Bicocca, Viale Sarca 336, 20126, Milano, Italy and 2Bader Lab, The Donnelly Centre, University of Toronto, 160 College Street, M5S 3E1, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750","https://openalex.org/I66752286"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.4169,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.64303654,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"29","issue":"4","first_page":"513","last_page":"514"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.0008999999845400453,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6530957818031311},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6218064427375793},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5681591629981995},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.5562540888786316},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5297110080718994},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4467865228652954},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4020376205444336},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3294338583946228},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22694656252861023},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18168962001800537},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08779820799827576}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6530957818031311},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6218064427375793},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5681591629981995},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.5562540888786316},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5297110080718994},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4467865228652954},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4020376205444336},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3294338583946228},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22694656252861023},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18168962001800537},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08779820799827576},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bts726","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts726","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23292740","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23292740","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2907853","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3888149","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:arts.units.it:11368/2956340","is_oa":false,"landing_page_url":"http://hdl.handle.net/11368/2956340","pdf_url":null,"source":{"id":"https://openalex.org/S4306400480","display_name":"ArTS Archivio della ricerca di Trieste (University of Trieste https://www.units.it/)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I142444530","host_organization_name":"University of Trieste","host_organization_lineage":["https://openalex.org/I142444530"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:boa.unimib.it:10281/39778","is_oa":false,"landing_page_url":"http://hdl.handle.net/10281/39778","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3316149902","display_name":null,"funder_award_id":"P41-GM103504","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1966954598","https://openalex.org/W1971224531","https://openalex.org/W1997124480","https://openalex.org/W2078201066","https://openalex.org/W2131250960","https://openalex.org/W2155142785","https://openalex.org/W2184417913","https://openalex.org/W2302315068","https://openalex.org/W2601212161","https://openalex.org/W6697985442"],"related_works":["https://openalex.org/W4287378204","https://openalex.org/W2135896045","https://openalex.org/W2032799661","https://openalex.org/W2884256268","https://openalex.org/W2131025197","https://openalex.org/W2171763327","https://openalex.org/W2154615478","https://openalex.org/W2031892952","https://openalex.org/W3108451992","https://openalex.org/W4385417763"],"abstract_inverted_index":{"SUMMARY:":[0],"The":[1,44],"characterization":[2],"of":[3,7,14,32,54,73,99,123],"the":[4,27,30,71,77,88,97,133],"complex":[5],"phenomenon":[6],"cell":[8,41,89,102],"differentiation":[9,42,85],"is":[10,21,52],"a":[11,22,61,82,100],"key":[12],"goal":[13],"both":[15],"systems":[16],"and":[17,29],"computational":[18],"biology.":[19],"GeStoDifferent":[20,69],"Cytoscape":[23,111,134],"plugin":[24],"aimed":[25],"at":[26,129,132],"generation":[28],"identification":[31],"gene":[33],"regulatory":[34],"networks":[35,58,105],"(GRNs)":[36],"describing":[37],"an":[38],"arbitrary":[39],"stochastic":[40,83],"process.":[43],"(dynamical)":[45],"model":[46],"adopted":[47],"to":[48,119],"describe":[49],"general":[50],"GRNs":[51,74],"that":[53,91],"noisy":[55],"random":[56],"Boolean":[57],"(NRBNs),":[59],"with":[60,81],"specific":[62],"focus":[63],"on":[64],"their":[65],"emergent":[66],"dynamical":[67],"behavior.":[68],"explores":[70],"space":[72],"by":[75,95,110],"filtering":[76],"NRBN":[78],"instances":[79],"inconsistent":[80],"lineage":[84],"tree":[86],"representing":[87],"lineages":[90],"can":[92,106],"be":[93,108],"obtained":[94],"following":[96],"fate":[98],"stem":[101],"descendant.":[103],"Matched":[104],"then":[107],"analyzed":[109],"network":[112],"analysis":[113],"algorithms":[114],"or,":[115],"for":[116],"instance,":[117],"used":[118],"define":[120],"(multiscale)":[121],"models":[122],"cellular":[124],"dynamics.":[125],"AVAILABILITY:":[126],"Freely":[127],"available":[128],"http://bimib.disco.unimib.it/index.php/Retronet#GESTODifferent":[130],"or":[131],"App":[135],"Store":[136],"http://apps.cytoscape.org/.":[137]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-09-02T18:50:13.731487","created_date":"2016-06-24T00:00:00"}
