{"id":"https://openalex.org/W2140057519","doi":"https://doi.org/10.1093/bioinformatics/bts704","title":"SwiftLink: parallel MCMC linkage analysis using multicore CPU and GPU","display_name":"SwiftLink: parallel MCMC linkage analysis using multicore CPU and GPU","publication_year":2012,"publication_date":"2012-12-13","ids":{"openalex":"https://openalex.org/W2140057519","doi":"https://doi.org/10.1093/bioinformatics/bts704","mag":"2140057519","pmid":"https://pubmed.ncbi.nlm.nih.gov/23239673"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts704","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts704","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/4/413/48898702/bioinformatics_29_4_413.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/4/413/48898702/bioinformatics_29_4_413.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007118986","display_name":"Alan Medlar","orcid":"https://orcid.org/0000-0002-5139-9483"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["FI","GB"],"is_corresponding":true,"raw_author_name":"Alan Medlar","raw_affiliation_strings":["1 Division of Medicine, University College London, London WC1E 6BT, UK, 2Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland, 3Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, Helsinki 00014, Finland and 4Department of Computer Science, University College London, London WC1E 6BT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Division of Medicine, University College London, London WC1E 6BT, UK, 2Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland, 3Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, Helsinki 00014, Finland and 4Department of Computer Science, University College London, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001270670","display_name":"Dorota G\u0142owacka","orcid":"https://orcid.org/0000-0001-7008-3380"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Dorota G\u0142owacka","raw_affiliation_strings":["1 Division of Medicine, University College London, London WC1E 6BT, UK, 2Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland, 3Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, Helsinki 00014, Finland and 4Department of Computer Science, University College London, London WC1E 6BT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Division of Medicine, University College London, London WC1E 6BT, UK, 2Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland, 3Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, Helsinki 00014, Finland and 4Department of Computer Science, University College London, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064875792","display_name":"Horia Stanescu","orcid":"https://orcid.org/0000-0001-5853-5030"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Horia Stanescu","raw_affiliation_strings":["1 Division of Medicine, University College London, London WC1E 6BT, UK, 2Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland, 3Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, Helsinki 00014, Finland and 4Department of Computer Science, University College London, London WC1E 6BT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Division of Medicine, University College London, London WC1E 6BT, UK, 2Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland, 3Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, Helsinki 00014, Finland and 4Department of Computer Science, University College London, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063296381","display_name":"Kevin Bryson","orcid":"https://orcid.org/0000-0002-1163-6368"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Kevin Bryson","raw_affiliation_strings":["1 Division of Medicine, University College London, London WC1E 6BT, UK, 2Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland, 3Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, Helsinki 00014, Finland and 4Department of Computer Science, University College London, London WC1E 6BT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Division of Medicine, University College London, London WC1E 6BT, UK, 2Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland, 3Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, Helsinki 00014, Finland and 4Department of Computer Science, University College London, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043234105","display_name":"Robert Kleta","orcid":"https://orcid.org/0000-0002-0228-8656"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Robert Kleta","raw_affiliation_strings":["1 Division of Medicine, University College London, London WC1E 6BT, UK, 2Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland, 3Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, Helsinki 00014, Finland and 4Department of Computer Science, University College London, London WC1E 6BT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Division of Medicine, University College London, London WC1E 6BT, UK, 2Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland, 3Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, Helsinki 00014, Finland and 4Department of Computer Science, University College London, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5007118986"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I45129253"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9361,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.77467203,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"29","issue":"4","first_page":"413","last_page":"419"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.0013000000035390258,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.816643238067627},{"id":"https://openalex.org/keywords/markov-chain-monte-carlo","display_name":"Markov chain Monte Carlo","score":0.5804242491722107},{"id":"https://openalex.org/keywords/linkage","display_name":"Linkage (software)","score":0.5677236318588257},{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.5599060654640198},{"id":"https://openalex.org/keywords/graphics-processing-unit","display_name":"Graphics processing unit","score":0.5535712838172913},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5069170594215393},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.5015983581542969},{"id":"https://openalex.org/keywords/massively-parallel","display_name":"Massively parallel","score":0.4312482476234436},{"id":"https://openalex.org/keywords/massive-parallel-sequencing","display_name":"Massive parallel sequencing","score":0.43041127920150757},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24462002515792847},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.1574203372001648},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.13694512844085693},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13194531202316284},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1177527904510498}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.816643238067627},{"id":"https://openalex.org/C111350023","wikidata":"https://www.wikidata.org/wiki/Q1191869","display_name":"Markov chain Monte Carlo","level":3,"score":0.5804242491722107},{"id":"https://openalex.org/C31266012","wikidata":"https://www.wikidata.org/wiki/Q6554340","display_name":"Linkage (software)","level":3,"score":0.5677236318588257},{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.5599060654640198},{"id":"https://openalex.org/C2779851693","wikidata":"https://www.wikidata.org/wiki/Q183484","display_name":"Graphics processing unit","level":2,"score":0.5535712838172913},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5069170594215393},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.5015983581542969},{"id":"https://openalex.org/C190475519","wikidata":"https://www.wikidata.org/wiki/Q544384","display_name":"Massively parallel","level":2,"score":0.4312482476234436},{"id":"https://openalex.org/C192800701","wikidata":"https://www.wikidata.org/wiki/Q6784807","display_name":"Massive parallel sequencing","level":4,"score":0.43041127920150757},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24462002515792847},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.1574203372001648},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.13694512844085693},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13194531202316284},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1177527904510498},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006319","descriptor_name":"Hearing Loss, Sensorineural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006319","descriptor_name":"Hearing Loss, Sensorineural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006319","descriptor_name":"Hearing Loss, Sensorineural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008040","descriptor_name":"Genetic Linkage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008040","descriptor_name":"Genetic Linkage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008040","descriptor_name":"Genetic Linkage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008607","descriptor_name":"Intellectual Disability","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008607","descriptor_name":"Intellectual Disability","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008607","descriptor_name":"Intellectual Disability","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012640","descriptor_name":"Seizures","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012640","descriptor_name":"Seizures","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012640","descriptor_name":"Seizures","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bts704","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts704","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/4/413/48898702/bioinformatics_29_4_413.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23239673","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23239673","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:eprints.gla.ac.uk:269964","is_oa":false,"landing_page_url":"http://eprints.gla.ac.uk/269964/","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":false,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Articles"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1380475","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1380475/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BIOINFORMATICS , 29 (4) pp. 413-419. (2013)","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts704","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts704","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/4/413/48898702/bioinformatics_29_4_413.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140057519.pdf","grobid_xml":"https://content.openalex.org/works/W2140057519.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1485593740","https://openalex.org/W1519466388","https://openalex.org/W1541755161","https://openalex.org/W1548531895","https://openalex.org/W1976511672","https://openalex.org/W1991311566","https://openalex.org/W1995215976","https://openalex.org/W1998158007","https://openalex.org/W1999602116","https://openalex.org/W2007184488","https://openalex.org/W2015982595","https://openalex.org/W2048988573","https://openalex.org/W2049689852","https://openalex.org/W2053012165","https://openalex.org/W2053114866","https://openalex.org/W2075366918","https://openalex.org/W2086059732","https://openalex.org/W2100583455","https://openalex.org/W2107871825","https://openalex.org/W2120381149","https://openalex.org/W2136485386","https://openalex.org/W2165952534","https://openalex.org/W2179629101","https://openalex.org/W2322461306","https://openalex.org/W2604607099","https://openalex.org/W3104433300","https://openalex.org/W6630799319","https://openalex.org/W6632767048","https://openalex.org/W6676126879","https://openalex.org/W6786466339"],"related_works":["https://openalex.org/W2165949232","https://openalex.org/W4200016197","https://openalex.org/W2063372669","https://openalex.org/W2085124982","https://openalex.org/W70664006","https://openalex.org/W2064869401","https://openalex.org/W2170268965","https://openalex.org/W2296294286","https://openalex.org/W2029285237","https://openalex.org/W2140057519"],"abstract_inverted_index":{"MOTIVATION:":[0],"Linkage":[1],"analysis":[2,47,110,173,224],"remains":[3],"an":[4,139],"important":[5,19],"tool":[6],"in":[7],"elucidating":[8],"the":[9,21,28,52,58,61,113,131,136,142,213,221],"genetic":[10],"component":[11],"of":[12,23,54,60,133,138,188],"disease":[13],"and":[14,120,205,216],"has":[15],"become":[16],"even":[17],"more":[18],"with":[20,38,50,57,65,72,141,179,192,200],"advent":[22],"whole":[24],"exome":[25],"sequencing,":[26],"enabling":[27],"user":[29],"to":[30,43,82,91,146,165],"focus":[31],"on":[32,174],"only":[33,69],"those":[34],"genomic":[35],"regions":[36],"co-segregating":[37],"Mendelian":[39],"traits.":[40],"Unfortunately,":[41],"methods":[42,78],"perform":[44],"multipoint":[45,171],"linkage":[46,109,172,223],"scale":[48],"poorly":[49],"either":[51],"number":[53],"markers":[55,67],"or":[56],"size":[59],"pedigree.":[62],"Large":[63],"pedigrees":[64],"many":[66],"can":[68],"be":[70],"evaluated":[71],"Markov":[73],"chain":[74],"Monte":[75],"Carlo":[76],"(MCMC)":[77],"that":[79,106],"are":[80],"slow":[81],"converge":[83],"and,":[84],"as":[85],"no":[86],"attempts":[87],"have":[88],"been":[89],"made":[90],"exploit":[92],"parallelism,":[93],"massively":[94],"underuse":[95],"available":[96,230],"processing":[97,123],"power.":[98],"Here,":[99],"we":[100],"describe":[101],"SWIFTLINK,":[102],"a":[103,121,166,175,186,201,209,217],"novel":[104],"application":[105],"performs":[107],"MCMC":[108],"by":[111],"spreading":[112],"computational":[114],"burden":[115],"between":[116],"multiple":[117],"processor":[118],"cores":[119],"graphics":[122],"unit":[124],"(GPU)":[125],"simultaneously.":[126],"SWIFTLINK":[127,164,207,228],"was":[128],"designed":[129],"around":[130],"concept":[132],"explicitly":[134],"matching":[135],"characteristics":[137],"algorithm":[140],"underlying":[143],"computer":[144],"architecture":[145],"maximize":[147],"performance.":[148],"RESULTS:":[149],"We":[150,162],"implement":[151],"our":[152,198],"approach":[153],"using":[154],"existing":[155],"Gibbs":[156],"samplers":[157],"redesigned":[158],"for":[159],"parallel":[160],"hardware.":[161],"applied":[163],"real-world":[167],"dataset,":[168],"performing":[169],"parametric":[170],"highly":[176],"consanguineous":[177],"pedigree":[178],"EAST":[180],"syndrome,":[181],"containing":[182],"28":[183],"members,":[184],"where":[185],"subset":[187],"individuals":[189],"were":[190],"genotyped":[191],"single":[193],"nucleotide":[194],"polymorphisms":[195],"(SNPs).":[196],"In":[197],"experiments":[199],"four":[202],"core":[203],"CPU":[204],"GPU,":[206],"achieves":[208],"8.5\u00d7":[210],"speed-up":[211,219],"over":[212,220],"single-threaded":[214],"version":[215],"109\u00d7":[218],"popular":[222],"program":[225],"SIMWALK.":[226],"AVAILABILITY:":[227],"is":[229,236],"at":[231],"https://github.com/ajm/swiftlink.":[232],"All":[233],"source":[234],"code":[235],"licensed":[237],"under":[238],"GPLv3.":[239]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
