{"id":"https://openalex.org/W2166098531","doi":"https://doi.org/10.1093/bioinformatics/bts701","title":"Characterization of disordered proteins with ENSEMBLE","display_name":"Characterization of disordered proteins with ENSEMBLE","publication_year":2012,"publication_date":"2012-12-11","ids":{"openalex":"https://openalex.org/W2166098531","doi":"https://doi.org/10.1093/bioinformatics/bts701","mag":"2166098531","pmid":"https://pubmed.ncbi.nlm.nih.gov/23233655"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts701","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts701","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103417101","display_name":"Micka\u00ebl Krzeminski","orcid":null},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]},{"id":"https://openalex.org/I4210141030","display_name":"SickKids Foundation","ror":"https://ror.org/04374qe70","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210141030"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Micka\u00ebl Krzeminski","raw_affiliation_strings":["1 Molecular Structure & Function Program, Hospital for Sick Children, Toronto, ON M5G 1X8, Canada and 2Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada"],"affiliations":[{"raw_affiliation_string":"1 Molecular Structure & Function Program, Hospital for Sick Children, Toronto, ON M5G 1X8, Canada and 2Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada","institution_ids":["https://openalex.org/I185261750","https://openalex.org/I2801317318","https://openalex.org/I4210141030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002238592","display_name":"Joseph A. Marsh","orcid":"https://orcid.org/0000-0003-4132-0628"},"institutions":[{"id":"https://openalex.org/I4210141030","display_name":"SickKids Foundation","ror":"https://ror.org/04374qe70","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210141030"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Joseph A. Marsh","raw_affiliation_strings":["1 Molecular Structure & Function Program, Hospital for Sick Children, Toronto, ON M5G 1X8, Canada and 2Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada"],"affiliations":[{"raw_affiliation_string":"1 Molecular Structure & Function Program, Hospital for Sick Children, Toronto, ON M5G 1X8, Canada and 2Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada","institution_ids":["https://openalex.org/I185261750","https://openalex.org/I2801317318","https://openalex.org/I4210141030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091790146","display_name":"Chris Neale","orcid":"https://orcid.org/0000-0001-9912-078X"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4210141030","display_name":"SickKids Foundation","ror":"https://ror.org/04374qe70","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210141030"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chris Neale","raw_affiliation_strings":["1 Molecular Structure & Function Program, Hospital for Sick Children, Toronto, ON M5G 1X8, Canada and 2Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada"],"affiliations":[{"raw_affiliation_string":"1 Molecular Structure & Function Program, Hospital for Sick Children, Toronto, ON M5G 1X8, Canada and 2Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada","institution_ids":["https://openalex.org/I185261750","https://openalex.org/I2801317318","https://openalex.org/I4210141030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074870997","display_name":"Wing\u2010Yiu Choy","orcid":"https://orcid.org/0000-0002-2124-7278"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4210141030","display_name":"SickKids Foundation","ror":"https://ror.org/04374qe70","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210141030"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Wing-Yiu Choy","raw_affiliation_strings":["1 Molecular Structure & Function Program, Hospital for Sick Children, Toronto, ON M5G 1X8, Canada and 2Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada"],"affiliations":[{"raw_affiliation_string":"1 Molecular Structure & Function Program, Hospital for Sick Children, Toronto, ON M5G 1X8, Canada and 2Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada","institution_ids":["https://openalex.org/I185261750","https://openalex.org/I2801317318","https://openalex.org/I4210141030"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087683429","display_name":"Julie D. Forman\u2010Kay","orcid":"https://orcid.org/0000-0001-8265-972X"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]},{"id":"https://openalex.org/I4210141030","display_name":"SickKids Foundation","ror":"https://ror.org/04374qe70","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210141030"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Julie D. Forman-Kay","raw_affiliation_strings":["1 Molecular Structure & Function Program, Hospital for Sick Children, Toronto, ON M5G 1X8, Canada and 2Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada"],"affiliations":[{"raw_affiliation_string":"1 Molecular Structure & Function Program, Hospital for Sick Children, Toronto, ON M5G 1X8, Canada and 2Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada","institution_ids":["https://openalex.org/I185261750","https://openalex.org/I2801317318","https://openalex.org/I4210141030"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5087683429"],"corresponding_institution_ids":["https://openalex.org/I185261750","https://openalex.org/I2801317318","https://openalex.org/I4210141030"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.2438,"has_fulltext":false,"cited_by_count":155,"citation_normalized_percentile":{"value":0.96595681,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"29","issue":"3","first_page":"398","last_page":"399"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.9287039041519165},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7309631109237671},{"id":"https://openalex.org/keywords/characterization","display_name":"Characterization (materials science)","score":0.5560160875320435},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5522586107254028},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5170170068740845},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.488340824842453},{"id":"https://openalex.org/keywords/intrinsically-disordered-proteins","display_name":"Intrinsically disordered proteins","score":0.43781599402427673},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37070828676223755},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3066778779029846},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2706769108772278},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1412334144115448},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10694515705108643},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.10216259956359863},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.09366780519485474}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.9287039041519165},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7309631109237671},{"id":"https://openalex.org/C2780841128","wikidata":"https://www.wikidata.org/wiki/Q5073781","display_name":"Characterization (materials science)","level":2,"score":0.5560160875320435},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5522586107254028},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5170170068740845},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.488340824842453},{"id":"https://openalex.org/C2778815515","wikidata":"https://www.wikidata.org/wiki/Q3408242","display_name":"Intrinsically disordered proteins","level":2,"score":0.43781599402427673},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37070828676223755},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3066778779029846},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2706769108772278},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1412334144115448},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10694515705108643},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.10216259956359863},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.09366780519485474},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts701","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts701","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23233655","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23233655","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.821.5753","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.821.5753","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2012/12/10/bioinformatics.bts701.full.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1988624456","https://openalex.org/W1988878165","https://openalex.org/W1994907993","https://openalex.org/W1995017064","https://openalex.org/W2006192061","https://openalex.org/W2023156380","https://openalex.org/W2033995262","https://openalex.org/W2034016778","https://openalex.org/W2052660967","https://openalex.org/W2056734463","https://openalex.org/W2066088601","https://openalex.org/W2067190679","https://openalex.org/W2069982947","https://openalex.org/W2070958052","https://openalex.org/W2071287761","https://openalex.org/W2072259830","https://openalex.org/W2076662394","https://openalex.org/W2097891553","https://openalex.org/W2108921801","https://openalex.org/W2118608964","https://openalex.org/W2137429227","https://openalex.org/W2150697021","https://openalex.org/W2170671445","https://openalex.org/W2319226565"],"related_works":["https://openalex.org/W2480056510","https://openalex.org/W2412623563","https://openalex.org/W190299232","https://openalex.org/W1521481095","https://openalex.org/W594361471","https://openalex.org/W2604964690","https://openalex.org/W2417897055","https://openalex.org/W2613359208","https://openalex.org/W2291334382","https://openalex.org/W4249676448"],"abstract_inverted_index":{"ENSEMBLE":[0],"is":[1,14],"a":[2,10,26],"program":[3],"implemented":[4],"in":[5,9],"C":[6],"and":[7,22],"embedded":[8],"Perl":[11],"wrapper.":[12],"It":[13],"supported":[15],"on":[16],"main":[17],"Linux":[18],"distributions.":[19],"Source":[20],"codes":[21],"installation":[23],"files,":[24],"including":[25],"detailed":[27],"example,":[28],"can":[29],"be":[30],"freely":[31],"downloaded":[32],"at":[33],"http://abragam.med.utoronto.ca/\u223cJFKlab.":[34]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":18},{"year":2015,"cited_by_count":19},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":9}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
