{"id":"https://openalex.org/W2163262659","doi":"https://doi.org/10.1093/bioinformatics/bts677","title":"Scribl: an HTML5 Canvas-based graphics library for visualizing genomic data over the web","display_name":"Scribl: an HTML5 Canvas-based graphics library for visualizing genomic data over the web","publication_year":2012,"publication_date":"2012-11-19","ids":{"openalex":"https://openalex.org/W2163262659","doi":"https://doi.org/10.1093/bioinformatics/bts677","mag":"2163262659","pmid":"https://pubmed.ncbi.nlm.nih.gov/23172864"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts677","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts677","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/3/381/48892061/bioinformatics_29_3_381.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/3/381/48892061/bioinformatics_29_3_381.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103882008","display_name":"Chase Miller","orcid":null},"institutions":[{"id":"https://openalex.org/I103531236","display_name":"Boston College","ror":"https://ror.org/02n2fzt79","country_code":"US","type":"education","lineage":["https://openalex.org/I103531236"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chase A. Miller","raw_affiliation_strings":["Department of Biology, Boston College, Chestnut Hill, MA 02467, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Boston College, Chestnut Hill, MA 02467, USA","institution_ids":["https://openalex.org/I103531236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023333723","display_name":"Jon Anthony","orcid":null},"institutions":[{"id":"https://openalex.org/I103531236","display_name":"Boston College","ror":"https://ror.org/02n2fzt79","country_code":"US","type":"education","lineage":["https://openalex.org/I103531236"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jon Anthony","raw_affiliation_strings":["Department of Biology, Boston College, Chestnut Hill, MA 02467, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Boston College, Chestnut Hill, MA 02467, USA","institution_ids":["https://openalex.org/I103531236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091734340","display_name":"Michelle M. Meyer","orcid":"https://orcid.org/0000-0001-7014-9271"},"institutions":[{"id":"https://openalex.org/I103531236","display_name":"Boston College","ror":"https://ror.org/02n2fzt79","country_code":"US","type":"education","lineage":["https://openalex.org/I103531236"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michelle M. Meyer","raw_affiliation_strings":["Department of Biology, Boston College, Chestnut Hill, MA 02467, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Boston College, Chestnut Hill, MA 02467, USA","institution_ids":["https://openalex.org/I103531236"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000369565","display_name":"G\u00e1bor Marth","orcid":"https://orcid.org/0000-0003-0222-1694"},"institutions":[{"id":"https://openalex.org/I103531236","display_name":"Boston College","ror":"https://ror.org/02n2fzt79","country_code":"US","type":"education","lineage":["https://openalex.org/I103531236"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gabor Marth","raw_affiliation_strings":["Department of Biology, Boston College, Chestnut Hill, MA 02467, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Boston College, Chestnut Hill, MA 02467, USA","institution_ids":["https://openalex.org/I103531236"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5000369565"],"corresponding_institution_ids":["https://openalex.org/I103531236"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":2.2454,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.88504972,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"29","issue":"3","first_page":"381","last_page":"383"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.31529998779296875,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.31529998779296875,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.2184000015258789,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.10199999809265137,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7783193588256836},{"id":"https://openalex.org/keywords/html5","display_name":"HTML5","score":0.6380138993263245},{"id":"https://openalex.org/keywords/interactivity","display_name":"Interactivity","score":0.6288332939147949},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.6019822955131531},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5743584036827087},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.550819993019104},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.49846363067626953},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4880932569503784},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4605746269226074},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.44258615374565125},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.21011030673980713}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7783193588256836},{"id":"https://openalex.org/C84063617","wikidata":"https://www.wikidata.org/wiki/Q2053","display_name":"HTML5","level":2,"score":0.6380138993263245},{"id":"https://openalex.org/C144430266","wikidata":"https://www.wikidata.org/wiki/Q839721","display_name":"Interactivity","level":2,"score":0.6288332939147949},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.6019822955131531},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5743584036827087},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.550819993019104},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49846363067626953},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4880932569503784},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4605746269226074},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.44258615374565125},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.21011030673980713},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bts677","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts677","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/3/381/48892061/bioinformatics_29_3_381.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23172864","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23172864","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2892625","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3562066","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1028.4641","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1028.4641","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2012/11/19/bioinformatics.bts677.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts677","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts677","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/3/381/48892061/bioinformatics_29_3_381.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"},{"score":0.4000000059604645,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G242060868","display_name":null,"funder_award_id":"R01 HG004719","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2163262659.pdf"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1987482278","https://openalex.org/W2021341670","https://openalex.org/W2034607070","https://openalex.org/W2046958277","https://openalex.org/W2065987416","https://openalex.org/W2098417174","https://openalex.org/W2100827887","https://openalex.org/W2105114815","https://openalex.org/W2114850508","https://openalex.org/W2125263315","https://openalex.org/W2127226151","https://openalex.org/W2128016314","https://openalex.org/W2135415614","https://openalex.org/W2145477956","https://openalex.org/W2150934173","https://openalex.org/W2161633633","https://openalex.org/W2164075646","https://openalex.org/W2167155938"],"related_works":["https://openalex.org/W2484907013","https://openalex.org/W2606134820","https://openalex.org/W562146691","https://openalex.org/W2984839098","https://openalex.org/W2137830470","https://openalex.org/W589564914","https://openalex.org/W2342903424","https://openalex.org/W2750121105","https://openalex.org/W602441967","https://openalex.org/W88324370"],"abstract_inverted_index":{"MOTIVATION:":[0],"High-throughput":[1],"biological":[2,168],"research":[3],"requires":[4],"simultaneous":[5],"visualization":[6,193],"as":[7,9,200],"well":[8],"analysis":[10,25,53,67],"of":[11,110,212,223],"genomic":[12,20,192,201],"data,":[13],"e.g.":[14,85],"read":[15],"alignments,":[16],"variant":[17],"calls":[18],"and":[19,66,72,101,112,149,205,221,236],"annotations.":[21],"Traditionally,":[22],"such":[23,78,199],"integrative":[24],"required":[26],"desktop":[27,116,224],"applications":[28,160],"operating":[29],"on":[30],"locally":[31],"stored":[32,49,83,105],"data.":[33],"Many":[34],"current":[35],"terabyte-size":[36],"datasets":[37,79],"generated":[38],"by":[39],"large":[40,62],"public":[41],"consortia":[42],"projects,":[43],"however,":[44],"are":[45,68],"already":[46],"only":[47],"feasibly":[48],"at":[50,234],"specialist":[51],"genome":[52,174],"centers.":[54],"As":[55,118],"even":[56],"small":[57],"laboratories":[58],"can":[59],"afford":[60],"very":[61,132],"datasets,":[63],"local":[64],"storage":[65],"becoming":[69],"increasingly":[70],"limiting,":[71],"it":[73],"is":[74,230,237],"likely":[75],"that":[76,95,114,141,217],"most":[77],"will":[80,91],"soon":[81],"be":[82],"remotely,":[84],"in":[86,131,182,239],"the":[87,210,219],"cloud.":[88],"These":[89],"developments":[90],"require":[92],"web-based":[93,214],"tools":[94,216],"enable":[96],"users":[97,143],"to":[98,124,128,144,164],"access,":[99],"analyze":[100],"view":[102],"vast":[103],"remotely":[104],"data":[106,126,147,150,198],"with":[107,172,241],"a":[108,190],"level":[109],"sophistication":[111],"interactivity":[113,222],"approximates":[115],"applications.":[117,225],"rapidly":[119],"dropping":[120],"cost":[121],"enables":[122],"researchers":[123],"collect":[125],"intended":[127],"answer":[129,166],"questions":[130,169],"specialized":[133],"contexts,":[134],"developers":[135],"must":[136],"also":[137],"provide":[138],"software":[139],"libraries":[140],"empower":[142,162],"implement":[145],"customized":[146],"analyses":[148],"views":[151],"for":[152],"their":[153],"particular":[154],"application.":[155],"Such":[156],"specialized,":[157],"yet":[158],"lightweight,":[159],"would":[161],"scientists":[163],"better":[165],"specific":[167],"than":[170],"possible":[171],"general-purpose":[173],"browsers":[175,244],"currently":[176],"available.":[177],"RESULTS:":[178],"Using":[179],"recent":[180],"advances":[181],"core":[183],"web":[184],"technologies":[185],"(HTML5),":[186],"we":[187],"developed":[188],"Scribl,":[189],"flexible":[191],"library":[194],"specifically":[195],"targeting":[196],"coordinate-based":[197],"features,":[202],"DNA":[203],"sequence":[204],"genetic":[206],"variants.":[207],"Scribl":[208],"simplifies":[209],"development":[211],"sophisticated":[213],"graphical":[215],"approach":[218],"dynamism":[220],"AVAILABILITY":[226],"AND":[227],"IMPLEMENTATION:":[228],"Software":[229],"freely":[231],"available":[232],"online":[233],"http://chmille4.github.com/Scribl/":[235],"implemented":[238],"JavaScript":[240],"all":[242],"modern":[243],"supported.":[245]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":7}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
