{"id":"https://openalex.org/W2156480428","doi":"https://doi.org/10.1093/bioinformatics/bts666","title":"NetCAD: a network analysis tool for coronary artery disease-associated PPI network","display_name":"NetCAD: a network analysis tool for coronary artery disease-associated PPI network","publication_year":2012,"publication_date":"2012-11-17","ids":{"openalex":"https://openalex.org/W2156480428","doi":"https://doi.org/10.1093/bioinformatics/bts666","mag":"2156480428","pmid":"https://pubmed.ncbi.nlm.nih.gov/23162052"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts666","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts666","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079713027","display_name":"Guomin Ren","orcid":null},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guomin Ren","raw_affiliation_strings":["Department of Computational Biology and Bioinformatics, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology and Bioinformatics, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100406779","display_name":"Zhihua Liu","orcid":"https://orcid.org/0000-0003-4242-033X"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhihua Liu","raw_affiliation_strings":["Department of Computational Biology and Bioinformatics, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology and Bioinformatics, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China","institution_ids":["https://openalex.org/I200296433"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100406779"],"corresponding_institution_ids":["https://openalex.org/I200296433"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":1.107,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.7658986,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"29","issue":"2","first_page":"279","last_page":"280"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9635000228881836,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9635000228881836,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.005100000184029341,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.0027000000700354576,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6402666568756104},{"id":"https://openalex.org/keywords/coronary-artery-disease","display_name":"Coronary artery disease","score":0.6306731700897217},{"id":"https://openalex.org/keywords/cardiology","display_name":"Cardiology","score":0.34240448474884033},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3013401925563812}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6402666568756104},{"id":"https://openalex.org/C2778213512","wikidata":"https://www.wikidata.org/wiki/Q844935","display_name":"Coronary artery disease","level":2,"score":0.6306731700897217},{"id":"https://openalex.org/C164705383","wikidata":"https://www.wikidata.org/wiki/Q10379","display_name":"Cardiology","level":1,"score":0.34240448474884033},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3013401925563812}],"mesh":[{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts666","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts666","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23162052","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23162052","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W2012435004","https://openalex.org/W2012953300","https://openalex.org/W2070712841","https://openalex.org/W2091316387","https://openalex.org/W2100025044","https://openalex.org/W2107249189","https://openalex.org/W2139276570","https://openalex.org/W2143837740"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W3183948672","https://openalex.org/W3173606202","https://openalex.org/W3110381201","https://openalex.org/W2948807893","https://openalex.org/W2935909890","https://openalex.org/W2778153218","https://openalex.org/W2758277628","https://openalex.org/W2748952813","https://openalex.org/W1531601525"],"abstract_inverted_index":{"SUMMARY:":[0],"The":[1,98],"systematic":[2,89],"and":[3,20,39,112,131,150],"unbiased":[4],"charting":[5],"of":[6,42,61,67,91,100,155],"protein-protein":[7],"interaction":[8],"(PPI)":[9],"networks":[10],"relevant":[11],"to":[12],"health":[13],"or":[14,71,178],"diseases":[15],"has":[16],"become":[17],"an":[18],"important":[19,142],"burgeoning":[21],"challenge":[22],"in":[23,45,77,94],"systems":[24],"biology.":[25],"Further,":[26],"current":[27],"reports":[28],"have":[29,73],"supported":[30],"that":[31],"good":[32,136],"correlation":[33],"exists":[34],"between":[35],"the":[36,57,103,147],"topological":[37,116],"properties":[38],"biological":[40,110,143],"function":[41],"protein":[43,72],"nodes":[44],"networks.":[46],"Coronary":[47],"artery":[48],"disease":[49,63],"(CAD,":[50],"also":[51],"called":[52],"coronary":[53],"heart":[54,62],"disease)":[55],"is":[56,171],"most":[58],"common":[59],"type":[60],"worldwide.":[64],"Traditional":[65],"approaches":[66],"studying":[68],"individual":[69],"gene":[70],"shown":[74],"their":[75],"weakness":[76],"such":[78],"complex":[79],"disease.":[80],"Here,":[81],"we":[82],"provide":[83,141],"NetCAD,":[84],"a":[85,106],"web-based":[86],"tool":[87],"for":[88,145,153],"investigation":[90],"CAD-specific":[92],"proteins":[93],"human":[95],"PPI":[96,120],"network.":[97],"features":[99],"NetCAD":[101,139,170],"includes":[102],"following:":[104],"proposing":[105],"novel":[107],"method":[108],"combining":[109],"principles":[111],"graph":[113,134],"theory,":[114],"quantified":[115],"analysis":[117],"tools,":[118],"build-in":[119],"information":[121,144],"database":[122],"consolidated":[123],"from":[124],"major":[125],"public":[126],"databases,":[127],"creating":[128],"CAD-associated":[129],"subnetwork":[130],"visualizing":[132],"network":[133],"with":[135],"visual":[137],"effects.":[138],"may":[140],"uncovering":[146],"molecular":[148,164],"mechanisms":[149],"potential":[151],"targets":[152],"therapies":[154],"CAD,":[156],"which":[157],"could":[158],"not":[159],"be":[160],"found":[161],"merely":[162],"through":[163],"biology":[165],"methods.":[166],"AVAILABILITY":[167],"AND":[168],"IMPLEMENTATION:":[169],"freely":[172],"available":[173],"at:":[174],"http://www.herbbol.org/netcad/.":[175],"CONTACT:":[176],"zhliu@implad.ac.cn":[177],"zhliu.liulab@foxmail.com":[179]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
