{"id":"https://openalex.org/W2166604632","doi":"https://doi.org/10.1093/bioinformatics/bts637","title":"Introducing Drugster: a comprehensive and fully integrated drug design, lead and structure optimization toolkit","display_name":"Introducing Drugster: a comprehensive and fully integrated drug design, lead and structure optimization toolkit","publication_year":2012,"publication_date":"2012-10-25","ids":{"openalex":"https://openalex.org/W2166604632","doi":"https://doi.org/10.1093/bioinformatics/bts637","mag":"2166604632","pmid":"https://pubmed.ncbi.nlm.nih.gov/23104887"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts637","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts637","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/126/49060392/bioinformatics_29_1_126.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/126/49060392/bioinformatics_29_1_126.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036815066","display_name":"Dimitri\u03bfs Vlachakis","orcid":"https://orcid.org/0000-0003-1823-6102"},"institutions":[{"id":"https://openalex.org/I206127235","display_name":"Academy of Athens","ror":"https://ror.org/00qsdn986","country_code":"GR","type":"education","lineage":["https://openalex.org/I206127235"]},{"id":"https://openalex.org/I174878644","display_name":"University of Patras","ror":"https://ror.org/017wvtq80","country_code":"GR","type":"education","lineage":["https://openalex.org/I174878644"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Dimitrios Vlachakis","raw_affiliation_strings":["1 Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Athens, Greece and 2Computer Engineering and Informatics Department, School of Engineering, University of Patras, 26500 Patras, Greece"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Athens, Greece and 2Computer Engineering and Informatics Department, School of Engineering, University of Patras, 26500 Patras, Greece","institution_ids":["https://openalex.org/I206127235","https://openalex.org/I174878644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035098520","display_name":"Dimosthenis Tsagrasoulis","orcid":null},"institutions":[{"id":"https://openalex.org/I206127235","display_name":"Academy of Athens","ror":"https://ror.org/00qsdn986","country_code":"GR","type":"education","lineage":["https://openalex.org/I206127235"]},{"id":"https://openalex.org/I174878644","display_name":"University of Patras","ror":"https://ror.org/017wvtq80","country_code":"GR","type":"education","lineage":["https://openalex.org/I174878644"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Dimosthenis Tsagrasoulis","raw_affiliation_strings":["1 Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Athens, Greece and 2Computer Engineering and Informatics Department, School of Engineering, University of Patras, 26500 Patras, Greece"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Athens, Greece and 2Computer Engineering and Informatics Department, School of Engineering, University of Patras, 26500 Patras, Greece","institution_ids":["https://openalex.org/I206127235","https://openalex.org/I174878644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046892627","display_name":"Vasileios Megalooikonomou","orcid":null},"institutions":[{"id":"https://openalex.org/I174878644","display_name":"University of Patras","ror":"https://ror.org/017wvtq80","country_code":"GR","type":"education","lineage":["https://openalex.org/I174878644"]},{"id":"https://openalex.org/I206127235","display_name":"Academy of Athens","ror":"https://ror.org/00qsdn986","country_code":"GR","type":"education","lineage":["https://openalex.org/I206127235"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Vasileios Megalooikonomou","raw_affiliation_strings":["1 Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Athens, Greece and 2Computer Engineering and Informatics Department, School of Engineering, University of Patras, 26500 Patras, Greece"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Athens, Greece and 2Computer Engineering and Informatics Department, School of Engineering, University of Patras, 26500 Patras, Greece","institution_ids":["https://openalex.org/I206127235","https://openalex.org/I174878644"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052164166","display_name":"\u03a3\u03bf\u03c6\u03af\u03b1 \u039a\u03bf\u03c3\u03c3\u03af\u03b4\u03b1","orcid":"https://orcid.org/0000-0002-8841-2864"},"institutions":[{"id":"https://openalex.org/I174878644","display_name":"University of Patras","ror":"https://ror.org/017wvtq80","country_code":"GR","type":"education","lineage":["https://openalex.org/I174878644"]},{"id":"https://openalex.org/I206127235","display_name":"Academy of Athens","ror":"https://ror.org/00qsdn986","country_code":"GR","type":"education","lineage":["https://openalex.org/I206127235"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Sophia Kossida","raw_affiliation_strings":["1 Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Athens, Greece and 2Computer Engineering and Informatics Department, School of Engineering, University of Patras, 26500 Patras, Greece"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Athens, Greece and 2Computer Engineering and Informatics Department, School of Engineering, University of Patras, 26500 Patras, Greece","institution_ids":["https://openalex.org/I206127235","https://openalex.org/I174878644"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5036815066"],"corresponding_institution_ids":["https://openalex.org/I174878644","https://openalex.org/I206127235"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.1465,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.94441002,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"29","issue":"1","first_page":"126","last_page":"128"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9758999943733215,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.836438775062561},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7789194583892822},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6625596284866333},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5792660713195801},{"id":"https://openalex.org/keywords/dock","display_name":"DOCK","score":0.5281517505645752},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4915653169155121},{"id":"https://openalex.org/keywords/lead","display_name":"Lead (geology)","score":0.4185323715209961},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3663311302661896},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.34673571586608887},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.29350078105926514},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2331826388835907},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11284339427947998}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.836438775062561},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7789194583892822},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6625596284866333},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5792660713195801},{"id":"https://openalex.org/C93073132","wikidata":"https://www.wikidata.org/wiki/Q24726581","display_name":"DOCK","level":2,"score":0.5281517505645752},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4915653169155121},{"id":"https://openalex.org/C2777093003","wikidata":"https://www.wikidata.org/wiki/Q6508345","display_name":"Lead (geology)","level":2,"score":0.4185323715209961},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3663311302661896},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.34673571586608887},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.29350078105926514},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2331826388835907},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11284339427947998},{"id":"https://openalex.org/C114793014","wikidata":"https://www.wikidata.org/wiki/Q52109","display_name":"Geomorphology","level":1,"score":0.0},{"id":"https://openalex.org/C199104240","wikidata":"https://www.wikidata.org/wiki/Q118291","display_name":"Marine engineering","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts637","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts637","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/126/49060392/bioinformatics_29_1_126.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23104887","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23104887","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts637","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts637","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/126/49060392/bioinformatics_29_1_126.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3998201246","display_name":null,"funder_award_id":"Social","funder_id":"https://openalex.org/F4320338080","funder_display_name":"European Social Fund"},{"id":"https://openalex.org/G4447653093","display_name":null,"funder_award_id":"Network","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5374134968","display_name":null,"funder_award_id":"European Social Fund","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5997159177","display_name":null,"funder_award_id":"Next Generation","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320338080","display_name":"European Social Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2166604632.pdf","grobid_xml":"https://content.openalex.org/works/W2166604632.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1966078827","https://openalex.org/W2011230643","https://openalex.org/W2037788435","https://openalex.org/W2047399603","https://openalex.org/W2071486470","https://openalex.org/W2086779432","https://openalex.org/W2110283222","https://openalex.org/W2114367386","https://openalex.org/W2165565773","https://openalex.org/W2396663079"],"related_works":["https://openalex.org/W1583884134","https://openalex.org/W2808384273","https://openalex.org/W4230770129","https://openalex.org/W759941183","https://openalex.org/W2497061382","https://openalex.org/W2022220038","https://openalex.org/W2357049710","https://openalex.org/W4225714443","https://openalex.org/W4244145541","https://openalex.org/W2157449552"],"abstract_inverted_index":{"Drugster":[0],"can":[1],"be":[2],"freely":[3],"downloaded":[4],"via":[5],"our":[6],"dedicated":[7],"server":[8],"system":[9],"at":[10],"http://www.bioacademy.gr/bioinformatics/drugster/.":[11]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":11},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
